NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS62038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62038.1 Public Homo sapiens 17 PELP1 24 110 108 CCDS HistoryNCBI Gene:27043Re-query CCDS DB by CCDS ID:62038.1Re-query CCDS DB by GeneID:27043See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436683.6 ENSP00000416231.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436683.6Link to Ensembl Protein Viewer:ENSP00000416231.2Re-query CCDS DB by Nucleotide ID:ENST00000436683Re-query CCDS DB by Protein ID:ENSP00000416231
Original member Current member NCBI NM_001278241.2 NP_001265170.1 Accepted alive Link to Nucleotide Sequence:NM_001278241.2Link to Protein Sequence:NP_001265170.1Re-query CCDS DB by Nucleotide ID:NM_001278241Re-query CCDS DB by Protein ID:NP_001265170Link to BLAST:NP_001265170.1

Chromosomal Locations for CCDS 62038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4671439 4671531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4671691 4671882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4672114 4673145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673250 4673456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673619 4673674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674510 4674669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674809 4674956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675079 4675195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675274 4675362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675797 4675884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676036 4676162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676357 4676507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676753 4676812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682502 4682573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682803 4682931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGGAGCTGGCCGTGGCTGTCCTGAGGGACCTCCTCCGATATGCAGCCCAGCTGCCTGCACTGTTCCGGG
ACATCTCCATGAACCACCTCCCTGGCCTTCTCACCTCCCTGCTGGGCCTCAGGCCAGAGTGTGAGCAGTC
AGCATTGGAAGGAATGAAGGCTTGTATGACCTATTTCCCTCGGGCTTGTGGTTCTCTCAAAGGCAAGCTG
GCCTCATTTTTTCTGTCTAGGGTGGATGCCTTGAGCCCTCAGCTCCAACAGTTGGCCTGTGAGTGTTATT
CCCGGCTGCCCTCTTTAGGGGCTGGCTTTTCCCAAGGCCTGAAGCACACCGAGAGCTGGGAGCAGGAGCT
ACACAGTCTGCTGGCCTCACTGCACACCCTGCTGGGGGCCCTGTACGAGGGAGCAGAGACTGCTCCTGTG
CAGAATGAAGGCCCTGGGGTGGAGATGCTGCTGTCCTCAGAAGATGGTGATGCCCATGTCCTTCTCCAGC
TTCGGCAGAGGTTTTCGGGACTGGCCCGCTGCCTAGGGCTCATGCTCAGCTCTGAGTTTGGAGCTCCCGT
GTCCGTCCCTGTGCAGGAAATCCTGGATTTCATCTGCCGGACCCTCAGCGTCAGTAGCAAGAATATTAGC
TTGCATGGAGATGGTCCCCTGCGGCTGCTGCTGCTGCCCTCTATCCACCTTGAGGCCTTGGACCTGCTGT
CTGCACTCATCCTCGCGTGTGGAAGCCGGCTCTTGCGCTTTGGGATCCTGATCGGCCGCCTGCTTCCCCA
GGTCCTCAATTCCTGGAGCATCGGTAGAGATTCCCTCTCTCCAGGCCAGGAGAGGCCTTACAGCACGGTT
CGGACCAAGGTGTATGCGATATTAGAGCTGTGGGTGCAGGTTTGTGGGGCCTCGGCGGGAATGCTTCAGG
GAGGAGCCTCTGGAGAGGCCCTGCTCACCCACCTGCTCAGCGACATCTCCCCGCCAGCTGATGCCCTTAA
GCTGCGTAGCCCGCGGGGGAGCCCTGATGGGAGTTTGCAGACTGGGAAGCCTAGCGCCCCCAAGAAGCTA
AAGCTGGATGTGGGGGAAGCTATGGCCCCGCCAAGCCACCGGAAAGGGGATAGCAATGCCAACAGCGACG
TGTGTGCGGCTGCACTCAGAGGCCTCAGCCGGACCATCCTCATGTGTGGGCCTCTCATCAAGGAGGAGAC
TCACAGGAGACTGCATGACCTGGTCCTCCCCCTGGTCATGGGTGTACAGCAGGGTGAGGTCCTAGGCAGC
TCCCCGTACACGAGCTCCCGCTGCCGCCGTGAACTCTACTGCCTGCTGCTGGCGCTGCTGCTGGCCCCGT
CTCCTCGCTGCCCACCTCCTCTTGCCTGTGCCCTGCAAGCCTTCTCCCTCGGCCAGCGAGAAGATAGCCT
TGAGGTCTCCTCTTTCTGCTCAGAAGCACTGGTGACCTGTGCTGCTCTGACCCACCCCCGGGTTCCTCCC
CTGCAGCCCATGGGCCCCACCTGCCCCACACCTGCTCCAGTTCCCCCTCCTGAGGCCCCATCGCCCTTCA
GGGCCCCACCGTTCCATCCTCCGGGCCCCATGCCCTCAGTGGGCTCCATGCCCTCAGCAGGCCCCATGCC
TTCAGCAGGCCCCATGCCCTCAGCAGGCCCTGTGCCCTCGGCACGCCCTGGACCTCCCACCACAGCCAAC
CACCTAGGCCTTTCTGTCCCAGGCCTAGTGTCTGTCCCTCCCCGGCTTCTTCCTGGCCCTGAGAACCACC
GGGCAGGCTCAAATGAGGACCCCATCCTTGCCCCTAGTGGGACTCCCCCACCTACTATACCCCCAGATGA
AACTTTTGGGGGGAGAGTGCCCAGACCAGCCTTTGTCCACTATGACAAGGAGGAGGCATCTGATGTGGAG
ATCTCCTTGGAAAGTGACTCTGATGACAGCGTGGTGATCGTGCCCGAGGGGCTTCCCCCCCTGCCACCCC
CACCACCCTCAGGTGCCACACCACCCCCTATAGCCCCCACTGGGCCACCAACAGCCTCCCCTCCTGTGCC
AGCGAAGGAGGAGCCTGAAGAACTTCCTGCAGCCCCAGGGCCTCTCCCGCCACCCCCACCTCCGCCGCCG
CCTGTTCCTGGTCCTGTGACGCTCCCTCCACCCCAGTTGGTCCCTGAAGGGACTCCTGGTGGGGGAGGAC
CCCCAGCCCTGGAAGAGGATTTGACAGTTATTAATATCAACAGCAGTGATGAAGAGGAGGAGGAAGAGGA
AGAAGAGGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAGGAAGACTTTGAGGAAGAGGAAGAGGATGAA
GAGGAATATTTTGAAGAGGAAGAAGAGGAGGAAGAAGAGTTTGAGGAAGAATTTGAGGAAGAAGAAGGTG
AGTTAGAGGAAGAAGAAGAAGAGGAGGATGAGGAGGAGGAAGAAGAACTGGAAGAGGTGGAGAGGGAAGG
GGAAAGCCCTGCGGCAGGGCCCCCTCCCCAGGAGCTTGTTGAAGAAGAGCCCTCTGCTCCCCCAACCCTG
TTGGAAGAGGAGACTGAGGATGGGAGTGACAAGGTGCAGCCCCCACCAGAGACACCTGCAGAAGAAGAGA
TGGAGACAGAGACAGAGGCCGAAGCTCTCCAGGAAAAGGAGCAGGATGACACAGCTGCCATGCTGGCCGA
CTTCATCGATTGTCCCCCTGATGATGAGAAGCCACCACCTCCCACAGAGCCTGACTCCTAG

Translation (906 aa):
MELAVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRACGSLKGKL
ASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYEGAETAPV
QNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLSVSSKNIS
LHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLSPGQERPYSTV
RTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGKPSAPKKL
KLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQQGEVLGS
SPYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPP
LQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTTAN
HLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVE
ISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPP
PVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDE
EEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEREGESPAAGPPPQELVEEEPSAPPTL
LEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEKPPPPTEPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH