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Report for CCDS6160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6160.1 Public Homo sapiens 8 RP1 24 110 108 CCDS HistoryNCBI Gene:6101Re-query CCDS DB by CCDS ID:6160.1Re-query CCDS DB by GeneID:6101See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220676.2 ENSP00000220676.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220676.2Link to Ensembl Protein Viewer:ENSP00000220676.1Re-query CCDS DB by Nucleotide ID:ENST00000220676Re-query CCDS DB by Protein ID:ENSP00000220676
Original member Current member NCBI NM_006269.2 NP_006260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006269.2Link to Protein Sequence:NP_006260.1Re-query CCDS DB by Nucleotide ID:NM_006269Re-query CCDS DB by Protein ID:NP_006260Link to BLAST:NP_006260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006260.1 2156 P56715 2156 100% 0 0

Chromosomal Locations for CCDS 6160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 54620967 54621581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54622117 54622288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54624670 54630353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6471 nt):
ATGAGTGATACCCCTTCTACTGGTTTTTCCATCATTCATCCTACGTCTTCTGAAGGTCAAGTTCCACCCC
CTCGCCATTTGAGCCTCACTCATCCTGTTGTGGCCAAGCGAATCAGTTTCTACAAGAGCGGAGACCCCCA
ATTCGGCGGGGTCAGGGTGGTGGTCAACCCTCGCTCCTTTAAGTCCTTTGATGCTCTGCTGGATAACTTG
TCCAGGAAGGTGCCCCTCCCTTTTGGAGTGAGGAACATCAGCACCCCTCGGGGCAGGCACAGCATCACGC
GCCTGGAGGAGCTGGAGGACGGCGAGTCCTACCTATGTTCCCACGGCAGGAAGGTGCAGCCTGTAGACCT
GGACAAAGCCCGTCGGCGCCCGCGGCCCTGGCTCAGCAGCCGGGCCATTAGCGCGCACTCACCGCCCCAC
CCCGTAGCCGTCGCTGCTCCCGGCATGCCCCGCCCCCCACGGAGCCTAGTGGTCTTCAGGAATGGCGACC
CGAAGACGAGGCGTGCGGTTCTTCTGAGCAGGAGGGTCACCCAGAGCTTCGAGGCATTTCTACAGCACCT
GACAGAGGTCATGCAGCGCCCTGTGGTCAAGCTGTACGCTACGGACGGAAGGAGGGTTCCCAGCCTCCAG
GCAGTGATCCTGAGCTCTGGAGCTGTGGTGGCGGCAGGAAGGGAGCCATTTAAACCAGGAAATTATGACA
TCCAAAAATACTTGCTTCCTGCTAGATTACCAGGGATCTCTCAGCGTGTGTACCCCAAGGGAAATGCAAA
GTCAGAAAGCAGAAAGATAAGCACACATATGTCTTCAAGCTCAAGGTCCCAGATTTATTCTGTTTCTTCT
GAGAAAACACATAATAATGATTGCTACTTAGACTATTCTTTTGTTCCTGAAAAGTACTTGGCCTTAGAAA
AGAATGATTCTCAGAATTTACCAATATATCCTTCTGAAGATGATATTGAGAAATCAATTATTTTTAATCA
AGACGGCACTATGACAGTTGAGATGAAAGTTCGATTCAGAATAAAAGAGGAAGAAACCATAAAATGGACA
ACTACTGTCAGTAAAACTGGTCCTTCTAATAATGATGAAAAGAGTGAGATGAGTTTTCCAGGAAGAACAG
AAAGTCGATCATCTGGTTTAAAGCTTGCAGCATGTTCATTCTCTGCAGATGTGTCACCTATGGAGCGAAG
CAGTAATCAAGAGGGCAGTTTGGCAGAGGAGATAAACATTCAAATGACAGATCAAGTGGCTGAAACTTGC
AGTTCTGCTAGTTGGGAGAATGCTACTGTGGACACAGATATCATCCAGGGAACTCAAGACCAAGCAAAGC
ATCGTTTTTATAGGCCCCCTACACCTGGACTAAGAAGAGTGAGACAAAAGAAATCTGTGATTGGCAGTGT
GACCTTAGTATCTGAAACTGAGGTTCAAGAGAAAATGATTGGACAGTTTTCATATAGTGAAGAAAGGGAA
AGTGGGGAAAACAAGTCTGAGTATCACATGTTTACACATTCTTGCAGTAAAATGTCATCAGTATCTAACA
AACCAGTACTTGTTCAGATCAATAACAATGATCAAATGGAGGAGTCATCATTAGAAAGAAAAAAGGAAAA
CAGTCTGCTTAAGTCAAGTGCAATAAGTGCTGGTGTTATAGAAATTACAAGTCAGAAGATGTTAGAGATG
TCACATAATAATGGTTTGCCATCAACTATATCAAATAACTCAATTGTGGAGGAAGATGTAGTTGATTGTG
TGGTATTGGACAACAAAACTGGTATCAAGAACTTCAAAACTTATGGTAACACCAATGATAGGTTCAGTCC
TATTTCAGCAGATGCAACCCATTTTTCAAGTAATAACTCTGGAACTGACAAAAATATTTCTGAGGCTCCA
GCTTCAGAAGCATCCTCTACTGTCACTGCAAGAATTGACAGACTAATTAATGAATTTGCTCAGTGTGGTT
TAACAAAACTTCCAAAAAATGAAAAGAAGATTTTGTCATCTGTTGCCAGCAAAAAGAAGAAAAAATCTCG
ACAGCAAGCAATAAATTCCAGGTATCAAGATGGACAGCTTGCAACCAAAGGAATTCTTAATAAGAATGAG
AGAATAAACACAAAAGGTAGAATTACAAAGGAAATGATAGTGCAAGATTCAGATAGTCCCCTTAAAGGAG
GGATACTTTGTGAGGAAGACCTCCAGAAAAGTGATACTGTAATTGAATCAAATACTTTTTGTTCCAAAAG
TAATCTCAATTCCACGATTTCCAAGAATTTCCATAGAAATAAATTAAATACTACTCAAAATTCCAAGGTT
CAAGGACTTTTAACCAAAAGAAAATCTAGATCACTAAATAAAATAAGCTTAGGAGCACCTAAAAAAAGAG
AAATCGGTCAAAGAGATAAAGTGTTTCCTCACAATGAATCTAAATATTGCAAAAGTACTTTTGAAAACAA
AAGTTTATTTCATGTATTTAACATCCTTGAGCAAAAACCCAAAGATTTTTATGCACCGCAATCTCAAGCA
GAAGTGGCATCTGGGTATTTGAGAGGAATGGCAAAGAAGAGTTTAGTTTCAAAAGTTACTGATTCACACA
TAACTTTAAAAAGCCAGAAAAAACGTAAAGGGGATAAAGTGAAAGCAAGTGCTATTTTAAGTAAACAACA
TGCTACAACCAGGGCAAATTCTTTAGCTTCTTTGAAAAAACCTGATTTTCCTGAGGCTATTGCTCATCAT
TCAATTCAAAATTATATACAGAGTTGGTTGCAGAACATAAATCCATATCCAACTTTAAAGCCTATAAAAT
CAGCTCCAGTATGTAGAAATGAAACGAGTGTGGTAAATTGTAGCAATAATAGTTTTTCAGGGAATGATCC
CCATACAAATTCTGGAAAAATAAGTAATTTTGTTATGGAAAGTAATAAGCACATAACTAAAATTGCCGGT
TTGACAGGAGATAATCTATGTAAAGAGGGAGATAAGTCTTTTATTGCCAATGACACTGGTGAAGAAGATC
TCCATGAGACACAGGTTGGATCTCTGAATGATGCTTATTTGGTTCCCCTGCATGAACACTGTACTTTGTC
ACAGTCAGCTATTAATGATCATAATACTAAAAGTCATATAGCTGCTGAAAAATCAGGACCAGAGAAAAAA
CTTGTTTACCAGGAAATAAACCTAGCTAGAAAAAGGCAAAGTGTAGAGGCTGCCATTCAAGTAGATCCTA
TAGAAGAGGAAACTCCAAAAGACCTCTTACCAGTCCTGATGCTTCACCAATTGCAAGCTTCAGTTCCTGG
TATTCACAAGACTCAGAATGGAGTTGTTCAAATGCCAGGTTCACTTGCAGGTGTTCCCTTTCATTCTGCA
ATATGTAATTCATCCACTAATCTCCTTCTAGCTTGGCTCTTGGTGCTAAACCTAAAGGGAAGTATGAATA
GCTTCTGTCAAGTTGATGCTCACAAGGCTACCAACAAATCTTCAGAAACACTTGCATTGTTGGAGATTCT
AAAGCACATAGCTATCACAGAGGAAGCTGATGACTTGAAAGCTGCTGTTGCCAATTTAGTGGAGTCAACT
ACAAGCCACTTTGGACTCAGTGAGAAAGAACAAGACATGGTTCCAATAGATCTTTCTGCAAATTGTTCCA
CGGTCAACATTCAGAGTGTTCCTAAGTGCAGTGAAAATGAAAGAACACAAGGAATCTCCTCTTTGGATGG
AGGTTGCTCTGCCAGTGAGGCATGTGCCCCTGAAGTCTGTGTTTTGGAAGTGACTTGCTCTCCATGTGAG
ATGTGCACTGTAAATAAGGCTTATTCTCCAAAAGAGACATGTAACCCCAGTGACACTTTTTTTCCTAGTG
ATGGTTATGGTGTGGATCAGACTTCTATGAATAAGGCTTGTTTCCTAGGAGAGGTCTGTTCACTTACTGA
TACTGTGTTTTCTGATAAGGCTTGTGCTCAAAAGGAGAACCATACCTATGAGGGAGCTTGCCCAATTGAT
GAGACCTACGTTCCTGTCAATGTCTGCAATACCATTGACTTTTTAAACTCCAAAGAAAACACATATACTG
ATAACTTGGATTCAACTGAAGAGTTAGAAAGAGGTGATGACATTCAGAAAGATCTAAATATTTTGACAGA
CCCTGAATATAAAAATGGATTTAATACATTGGTGTCACATCAAAATGTCAGTAATTTAAGCTCCTGTGGC
CTTTGCCTAAGTGAAAAAGAAGCAGAACTTGATAAGAAACATAGTTCTCTAGATGATTTTGAAAATTGTT
CACTAAGGAAGTTTCAGGATGAAAATGCATATACTTCCTTTGATATGGAAGAACCACGGACTTCTGAAGA
ACCAGGCTCAATAACCAACAGCATGACATCAAGTGAAAGAAACATTTCAGAATTGGAATCTTTTGAAGAA
TTAGAAAACCATGACACTGATATCTTTAATACAGTGGTAAATGGAGGAGAGCAAGCCACTGAAGAATTAA
TCCAAGAAGAGGTAGAGGCTAGTAAAACTTTAGAATTGATAGACATCTCTAGTAAGAATATTATGGAAGA
AAAAAGAATGAACGGTATAATTTATGAAATAATCAGTAAGAGGCTGGCAACACCACCATCTTTAGATTTT
TGCTATGATTCTAAGCAAAATAGTGAAAAGGAGACCAATGAAGGAGAAACTAAGATGGTAAAAATGATGG
TGAAAACTATGGAAACTGGAAGTTATTCAGAGTCCTCTCCTGATTTAAAAAAATGCATCAAAAGTCCAGT
GACTTCTGATTGGTCAGACTATCGGCCTGACAGTGACAGTGAGCAGCCATATAAAACATCCAGTGATGAT
CCCAATGACAGTGGCGAACTTACCCAAGAGAAAGAATATAACATAGGATTTGTTAAAAGGGCAATAGAAA
AACTGTACGGTAAAGCAGATATTATCAAACCATCTTTTTTTCCTGGGTCTACCCGCAAATCTCAGGTTTG
TCCTTATAATTCTGTGGAATTTCAGTGTTCCAGGAAAGCAAGTCTTTATGATTCTGAAGGGCAGTCATTT
GGCTCTTCTGAACAGGTATCTAGTAGTTCATCTATGTTGCAGGAATTCCAGGAGGAAAGACAAGATAAGT
GTGATGTTAGTGCTGTGAGGGACAATTATTGTAGGGGTGACATTGTAGAACCTGGTACAAAACAAAATGA
TGATAGCAGAATCCTCACAGACATAGAGGAAGGAGTACTGATTGACAAAGGCAAATGGCTTCTGAAAGAA
AATCATTTGCTAAGGATGTCATCTGAAAATCCTGGCATGTGTGGCAATGCAGACACCACATCAGTGGACA
CCCTACTTGATAATAACAGCAGTGAGGTACCATATTCACATTTTGGTAATTTGGCCCCAGGCCCAACGAT
GGATGAACTCTCCTCTTCAGAACTCGAGGAACTGACTCAACCCCTTGAACTAAAATGCAATTACTTTAAC
ATGCCTCATGGTAGTGACTCAGAACCTTTTCATGAGGACTTGCTGGATGTTCGCAATGAAACCTGTGCCA
AGGAAAGAATAGCAAATCATCATACAGAGGAGAAGGGTAGTCATCAGTCAGAAAGAGTATGCACATCTGT
CACTCATTCCTTTATTTCTGCTGGTAACAAAGTCTACCCTGTCTCTGATGATGCTATTAAAAACCAACCA
TTGCCTGGCAGTAATATGATTCATGGTACACTTCAGGAAGCTGACTCTTTGGATAAACTGTATGCTCTTT
GTGGTCAACATTGCCCAATACTAACTGTTATTATCCAACCCATGAATGAGGAAGACCGAGGATTTGCATA
TCGCAAAGAATCTGATATTGAAAATTTCTTGGGTTTTTATTTATGGATGAAAATACACCCATATTTACTT
CAGACAGACAAAAATGTGTTCAGGGAAGAGAACAATAAAGCAAGTATGAGACAAAATCTTATTGATAATG
CCATTGGTGATATATTTGATCAGTTTTATTTCAGTAACACATTTGACTTGATGGGTAAAAGAAGAAAACA
AAAAAGAATTAACTTCTTGGGGTTAGAGGAAGAAGGTAATTTAAAGAAATTTCAACCAGATTTGAAGGAA
AGGTTTTGTATGAATTTCTTGCACACATCATTGTTAGTTGTGGGTAATGTGGATTCAAATACACAAGACC
TCAGCGGTCAGACAAATGAAATCTTTAAAGCAGTCGATGAGAATAACAACTTATTAAATAACAGATTCCA
GGGCTCAAGAACAAATCTCAACCAAGTAGTAAGAGAAAATATCAACTGTCATTACTTCTTTGAAATGCTT
GGTCAAGCTTGCCTCTTAGATATTTGCCAAGTTGAGACCTCCTTAAATATTAGCAACAGAAATATTTTAG
AACTTTGTATGTTTGAGGGTGAAAATCTTTTCATTTGGGAAGAGGAAGACATATTAAATTTAACTGATCT
TGAAAGCAGTAGAGAACAAGAAGATTTATAA

Translation (2156 aa):
MSDTPSTGFSIIHPTSSEGQVPPPRHLSLTHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKSFDALLDNL
SRKVPLPFGVRNISTPRGRHSITRLEELEDGESYLCSHGRKVQPVDLDKARRRPRPWLSSRAISAHSPPH
PVAVAAPGMPRPPRSLVVFRNGDPKTRRAVLLSRRVTQSFEAFLQHLTEVMQRPVVKLYATDGRRVPSLQ
AVILSSGAVVAAGREPFKPGNYDIQKYLLPARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIYSVSS
EKTHNNDCYLDYSFVPEKYLALEKNDSQNLPIYPSEDDIEKSIIFNQDGTMTVEMKVRFRIKEEETIKWT
TTVSKTGPSNNDEKSEMSFPGRTESRSSGLKLAACSFSADVSPMERSSNQEGSLAEEINIQMTDQVAETC
SSASWENATVDTDIIQGTQDQAKHRFYRPPTPGLRRVRQKKSVIGSVTLVSETEVQEKMIGQFSYSEERE
SGENKSEYHMFTHSCSKMSSVSNKPVLVQINNNDQMEESSLERKKENSLLKSSAISAGVIEITSQKMLEM
SHNNGLPSTISNNSIVEEDVVDCVVLDNKTGIKNFKTYGNTNDRFSPISADATHFSSNNSGTDKNISEAP
ASEASSTVTARIDRLINEFAQCGLTKLPKNEKKILSSVASKKKKKSRQQAINSRYQDGQLATKGILNKNE
RINTKGRITKEMIVQDSDSPLKGGILCEEDLQKSDTVIESNTFCSKSNLNSTISKNFHRNKLNTTQNSKV
QGLLTKRKSRSLNKISLGAPKKREIGQRDKVFPHNESKYCKSTFENKSLFHVFNILEQKPKDFYAPQSQA
EVASGYLRGMAKKSLVSKVTDSHITLKSQKKRKGDKVKASAILSKQHATTRANSLASLKKPDFPEAIAHH
SIQNYIQSWLQNINPYPTLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNSGKISNFVMESNKHITKIAG
LTGDNLCKEGDKSFIANDTGEEDLHETQVGSLNDAYLVPLHEHCTLSQSAINDHNTKSHIAAEKSGPEKK
LVYQEINLARKRQSVEAAIQVDPIEEETPKDLLPVLMLHQLQASVPGIHKTQNGVVQMPGSLAGVPFHSA
ICNSSTNLLLAWLLVLNLKGSMNSFCQVDAHKATNKSSETLALLEILKHIAITEEADDLKAAVANLVEST
TSHFGLSEKEQDMVPIDLSANCSTVNIQSVPKCSENERTQGISSLDGGCSASEACAPEVCVLEVTCSPCE
MCTVNKAYSPKETCNPSDTFFPSDGYGVDQTSMNKACFLGEVCSLTDTVFSDKACAQKENHTYEGACPID
ETYVPVNVCNTIDFLNSKENTYTDNLDSTEELERGDDIQKDLNILTDPEYKNGFNTLVSHQNVSNLSSCG
LCLSEKEAELDKKHSSLDDFENCSLRKFQDENAYTSFDMEEPRTSEEPGSITNSMTSSERNISELESFEE
LENHDTDIFNTVVNGGEQATEELIQEEVEASKTLELIDISSKNIMEEKRMNGIIYEIISKRLATPPSLDF
CYDSKQNSEKETNEGETKMVKMMVKTMETGSYSESSPDLKKCIKSPVTSDWSDYRPDSDSEQPYKTSSDD
PNDSGELTQEKEYNIGFVKRAIEKLYGKADIIKPSFFPGSTRKSQVCPYNSVEFQCSRKASLYDSEGQSF
GSSEQVSSSSSMLQEFQEERQDKCDVSAVRDNYCRGDIVEPGTKQNDDSRILTDIEEGVLIDKGKWLLKE
NHLLRMSSENPGMCGNADTTSVDTLLDNNSSEVPYSHFGNLAPGPTMDELSSSELEELTQPLELKCNYFN
MPHGSDSEPFHEDLLDVRNETCAKERIANHHTEEKGSHQSERVCTSVTHSFISAGNKVYPVSDDAIKNQP
LPGSNMIHGTLQEADSLDKLYALCGQHCPILTVIIQPMNEEDRGFAYRKESDIENFLGFYLWMKIHPYLL
QTDKNVFREENNKASMRQNLIDNAIGDIFDQFYFSNTFDLMGKRRKQKRINFLGLEEEGNLKKFQPDLKE
RFCMNFLHTSLLVVGNVDSNTQDLSGQTNEIFKAVDENNNLLNNRFQGSRTNLNQVVRENINCHYFFEML
GQACLLDICQVETSLNISNRNILELCMFEGENLFIWEEEDILNLTDLESSREQEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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