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Report for CCDS61490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61490.1 Public Homo sapiens 14 SIPA1L1 24 110 108 CCDS HistoryNCBI Gene:26037Re-query CCDS DB by CCDS ID:61490.1Re-query CCDS DB by GeneID:26037See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381232.8 ENSP00000370630.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381232.8Link to Ensembl Protein Viewer:ENSP00000370630.3Re-query CCDS DB by Nucleotide ID:ENST00000381232Re-query CCDS DB by Protein ID:ENSP00000370630
Original member Current member NCBI NM_001284245.3 NP_001271174.1 Accepted alive Link to Nucleotide Sequence:NM_001284245.3Link to Protein Sequence:NP_001271174.1Re-query CCDS DB by Nucleotide ID:NM_001284245Re-query CCDS DB by Protein ID:NP_001271174Link to BLAST:NP_001271174.1
Original member Current member NCBI NM_001386936.1 NP_001373865.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386936.1Link to Protein Sequence:NP_001373865.1Re-query CCDS DB by Nucleotide ID:NM_001386936Re-query CCDS DB by Protein ID:NP_001373865Link to BLAST:NP_001373865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271174.1 1783 O43166-2 1783 100% 0 0
NP_001373865.1 1783 O43166-2 1783 100% 0 0

Chromosomal Locations for CCDS 61490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 71587873 71589370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71618757 71618887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71624048 71624236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71650335 71650509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71658333 71658436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71661310 71661467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71671119 71671692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71672348 71672622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71685362 71685631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71698981 71699127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71702381 71702505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71705222 71705340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71709222 71709664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71723647 71723886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71724670 71724835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71730055 71730301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71733666 71733812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71735277 71735391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71738241 71738325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 71739018 71739161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5352 nt):
ATGACCAGCTTGAAACGGTCACAGACAGAAAGGCCTCTTGCCACTGACAGGGCCTCTGTTGTTGGCACAG
ACGGCACCCCCAAAGTCCACACTGATGATTTCTACATGCGGCGCTTCCGGTCCCAAAATGGCAGCTTAGG
ATCATCAGTTATGGCTCCTGTAGGACCCCCCCGAAGTGAAGGTTCTCACCATATAACCTCAACCCCCGGA
GTCCCAAAAATGGGGGTAAGGGCAAGGATTGCAGATTGGCCCCCAAGAAAGGAAAACATAAAAGAATCTA
GCCGTTCAAGCCAGGAAATAGAAACCTCAAGTTGCCTTGATAGCCTGTCCTCCAAAAGCAGTCCTGTGAG
TCAGGGAAGTTCTGTTAGCCTCAATTCCAATGACTCAGCCATGCTGAAAAGCATACAGAACACGCTGAAA
AACAAGACAAGACCGTCGGAGAACATGGACTCCAGATTTCTCATGCCTGAAGCCTACCCCAGCTCCCCCA
GAAAAGCTCTTCGCAGAATACGCCAGCGAAGCAACAGTGATATCACCATAAGTGAACTTGATGTGGATAG
CTTTGATGAATGTATCTCACCTACATACAAGACTGGACCATCACTGCACAGGGAATATGGTAGCACATCT
TCAATTGATAAACAGGGAACATCTGGAGAAAGCTTTTTTGATTTGTTAAAGGGCTACAAAGATGACAAAT
CTGATCGAGGTCCAACTCCAACCAAGCTCAGTGACTTTCTCATTACTGGTGGTGGCAAGGGTTCTGGTTT
CTCTTTGGATGTAATAGACGGGCCTATCTCACAGAGAGAGAACCTCAGGCTTTTTAAGGAAAGGGAAAAA
CCACTCAAGCGACGTTCAAAATCTGAAACTGGAGACTCATCTATTTTTCGTAAATTGCGCAATGCCAAAG
GTGAAGAACTTGGGAAGTCATCAGATCTTGAAGATAACCGATCAGAAGACTCTGTCAGGCCCTGGACATG
TCCAAAGTGCTTTGCCCACTATGATGTCCAGAGTATATTATTTGATTTGAATGAGGCAATTATGAACAGG
CACAATGTTATTAAGAGGAGAAACACCACCACTGGAGCTTCCGCAGCTGCCGTGGCATCCTTGGTCTCTG
GACCTCTGTCTCATTCAGCCAGTTTTAGCTCCCCAATGGGCAGCACAGAGGACCTGAATTCCAAAGGAAG
CCTCAGCATGGACCAGGGAGATGATAAAAGCAATGAGCTTGTAATGAGCTGTCCATATTTTCGGAATGAG
ATAGGTGGAGAAGGGGAGAGGAAAATCAGCCTTTCAAAATCAAATTCTGGCTCCTTTAGTGGATGTGAAA
GTGCCTCCTTTGAGTCTACCCTTAGTTCCCATTGCACAAATGCAGGAGTGGCAGTACTTGAAGTGCCCAA
GGAGAACTTGGTGTTGCACCTAGATAGAGTGAAAAGATACATCGTGGAACACGTAGATCTGGGTGCATAC
TATTATAGAAAATTTTTCTACCAGAAGGAACACTGGAACTATTTTGGGGCTGATGAGAATCTTGGTCCAG
TGGCTGTGAGCATTCGAAGGGAAAAACCAGATGAAATGAAAGAAAATGGATCTCCGTACAACTACCGAAT
AATTTTTAGAACTAGTGAGCTCATGACACTGAGAGGTTCGGTCCTGGAGGACGCCATTCCGTCGACAGCC
AAGCACTCGACAGCCAGAGGCCTGCCTCTCAAAGAAGTGCTGGAGCACGTGGTTCCTGAGCTCAATGTCC
AGTGCCTGCGGTTGGCCTTCAACACACCCAAGGTCACAGAGCAGCTCATGAAACTGGATGAACAAGGGCT
GAACTACCAGCAGAAAGTAGGCATCATGTACTGCAAAGCTGGACAGAGCACTGAAGAAGAGATGTACAAC
AATGAGTCAGCTGGCCCAGCCTTTGAAGAATTTCTTCAACTATTGGGAGAGCGAGTTCGGCTCAAAGGAT
TTGAGAAGTATCGAGCACAGCTTGATACCAAAACTGACTCCACTGGAACCCATTCTCTGTACACAACATA
CAAAGATTATGAAATTATGTTCCATGTTTCTACCATGCTGCCATACACACCCAACAACAAACAACAGCTC
CTGAGGAAGCGGCACATTGGAAATGATATCGTAACAATTGTTTTCCAAGAGCCTGGAGCACAGCCATTCA
GCCCAAAAAACATCCGATCCCACTTCCAGCACGTTTTCGTCATCGTCAGGGTGCACAATCCGTGCTCTGA
CAGTGTCTGTTATAGTGTGGCTGTTACCAGGTCCAGAGATGTGCCTTCCTTTGGGCCTCCCATTCCTAAA
GGGGTCACTTTCCCTAAGTCAAATGTGTTCAGGGACTTCCTTTTGGCGAAAGTGATTAATGCAGAAAATG
CTGCTCATAAATCGGAGAAGTTTCGGGCCATGGCAACTCGGACCCGCCAGGAATACCTGAAAGATCTGGC
AGAAAAGAATGTCACCAACACCCCTATCGACCCTTCTGGCAAGTTTCCGTTCATCTCTCTGGCTTCCAAG
AAGAAGGAAAAGTCTAAGCCATATCCAGGAGCCGAGCTCAGCAGCATGGGGGCCATTGTATGGGCAGTCC
GGGCTGAAGACTACAACAAGGCCATGGAACTAGACTGCCTTTTAGGGATCTCCAATGAGTTCATTGTGCT
CATTGAACAGGAAACAAAGAGCGTGGTCTTCAATTGTTCCTGTAGAGATGTGATAGGGTGGACTTCAACT
GACACCAGCCTCAAAATCTTCTATGAACGAGGAGAATGTGTTTCAGTGGGTAGTTTTATTAACATTGAGG
AGATCAAAGAGATTGTCAAAAGGTTGCAGTTTGTTTCAAAAGGCTGTGAATCGGTGGAGATGACTCTGCG
AAGAAATGGGCTAGGACAGCTTGGCTTCCATGTCAACTATGAGGGCATTGTGGCGGATGTGGAGCCCTAC
GGTTATGCCTGGCAGGCAGGGCTGAGGCAGGGCAGTCGCCTGGTGGAGATCTGCAAGGTGGCGGTAGCCA
CTCTGAGCCATGAGCAGATGATCGACCTCCTGAGAACATCTGTCACGGTGAAGGTTGTCATCATTCCCCC
GCATGATGACTGCACCCCGCGGAGGAGTTGCTCTGAAACCTACCGCATGCCAGTGATGGAGTACAAAATG
AATGAAGGTGTTTCATACGAATTCAAGTTTCCCTTCCGAAATAATAACAAGTGGCAGAGGAACGCCAGCA
AGGGGCCTCATTCACCTCAAGTCCCGTCCCAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA
AGGAGATGGGAAGATGCCTCCTCCAGAAAGAGCCGCCAACATCCCTCGAAGCATCTCCAGTGACGGGCGC
CCACTAGAGAGGCGGCTGTCTCCTGGTTCGGACATCTATGTGACGGTCTCATCCATGGCTTTAGCAAGAT
CCCAGTGTCGGAACTCTCCTAGCAACTTGTCTTCATCCAGTGATACTGGTTCTGTGGGGGGCACTTACAG
GCAGAAGTCCATGCCCGAAGGGTTTGGAGTGAGCCGTAGATCCCCAGCCTCCATTGACAGGCAGAACACC
CAGTCAGATATTGGTGGCAGCGGAAAATCCACGCCTAGCTGGCAAAGAAGTGAGGATAGCATTGCTGACC
AGATGGAGCCAACATGCCATCTCCCAGCAGTATCAAAGGTACTGCCAGCTTTCCGAGAGAGCCCCAGTGG
GAGATTAATGCGGCAGGATCCAGTGGTTCATTTGTCTCCAAACAAACAAGGGCATTCTGATAGCCACTAC
TCGAGCCACTCCAGTAGCAATACTCTCTCCAGCAATGCGTCAAGTGCCCATAGTGATGAGAAGTGGTACG
ATGGGGACCGCACAGAATCCGAACTCAACAGCTATAACTATCTGCAAGGCACCTCTGCTGACAGTGGCAT
TGACACCACCTCTTATGGCCCCAGCCACGGCAGCACAGCCTCGCTGGGGGCTGCCACATCGTCACCTCGC
TCAGGGCCAGGCAAGGAGAAAGTGGCACCCCTATGGCACAGCTCCAGTGAAGTAATCTCCATGGCAGATC
GGACTTTGGAGACAGAGAGCCACGGCCTGGACCGGAAAACAGAGTCTTCCCTGAGCTTAGACATACACAG
CAAGAGCCAAGCCGGCTCGACCCCTCTGACAAGGGAGAACAGCACCTTCAGTATAAACGATGCTGCTTCC
CACACAAGTACCATGAGCTCCCGACACTCTGCCAGCCCAGTGGTTTTCACCAGTGCCCGGAGTTCACCTA
AAGAAGAGCTTCATCCAGCTGCCCCCTCACAGCTCGCACCATCCTTCTCCTCCTCTTCCTCCTCCTCCTC
TGGTCCTAGGAGTTTTTACCCTCGCCAGGGCGCTACTAGCAAGTACCTGATTGGATGGAAAAAACCCGAA
GGAACCATAAACTCCGTGGGATTTATGGACACGAGAAAGCGTCATCAGAGCGATGGCAATGAAATAGCCC
ACACCAGGCTGCGTGCCTCAACCAGAGACCTCCGGGCATCTCCTAAGCCAACCTCCAAGTCCACCATTGA
AGAAGATCTAAAGAAACTAATTGATCTTGAAAGCCCAACTCCTGAATCACAGAAGAGTTTTAAGTTCCAC
GCACTCTCCTCTCCTCAGTCTCCTTTCCCCAGCACCCCCACCTCACGGCGGGCCTTGCACAGAACACTGT
CGGACGAGAGCATTTACAATAGCCAGAGGGAGCACTTTTTCACCTCCAGGGCGTCACTTCTGGACCAAGC
CCTGCCCAACGACGTCCTCTTCAGTAGCACGTACCCTTCTCTCCCCAAGTCGCTCCCGTTGAGGAGGCCT
TCTTACACCTTAGGAATGAAATCGCTGCATGGAGAGTTCTCAGCCTCGGACAGCTCCCTCACTGACATCC
AGGAGACCCGCAGGCAGCCTATGCCCGACCCTGGCCTGATGCCCCTGCCTGACACTGCTGCAGACTTGGA
TTGGTCCAACCTGGTAGATGCTGCCAAAGCCTATGAGGTCCAGAGAGCCTCATTTTTTGCTGCTAGTGAT
GAAAACCATCGCCCCTTGAGTGCTGCATCCAACAGTGATCAGCTGGAGGACCAGGCTCTGGCCCAGATGA
AGCCTTACAGCAGCAGTAAAGACTCCTCTCCCACTCTGGCTTCTAAAGTGGACCAGCTGGAAGGTATGCT
GAAGATGCTTCGGGAAGATTTGAAGAAGGAAAAAGAAGACAAAGCTCACCTTCAGGCGGAGGTGCAGCAC
CTGCGAGAGGACAACCTGAGGCTACAGGAGGAGTCCCAGAACGCCTCGGACAAGCTGAAGAAGTTCACAG
AATGGGTCTTCAACACCATAGACATGAGCTAG

Translation (1783 aa):
MTSLKRSQTERPLATDRASVVGTDGTPKVHTDDFYMRRFRSQNGSLGSSVMAPVGPPRSEGSHHITSTPG
VPKMGVRARIADWPPRKENIKESSRSSQEIETSSCLDSLSSKSSPVSQGSSVSLNSNDSAMLKSIQNTLK
NKTRPSENMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKTGPSLHREYGSTS
SIDKQGTSGESFFDLLKGYKDDKSDRGPTPTKLSDFLITGGGKGSGFSLDVIDGPISQRENLRLFKEREK
PLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIMNR
HNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLSMDQGDDKSNELVMSCPYFRNE
IGGEGERKISLSKSNSGSFSGCESASFESTLSSHCTNAGVAVLEVPKENLVLHLDRVKRYIVEHVDLGAY
YYRKFFYQKEHWNYFGADENLGPVAVSIRREKPDEMKENGSPYNYRIIFRTSELMTLRGSVLEDAIPSTA
KHSTARGLPLKEVLEHVVPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYN
NESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQL
LRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRVHNPCSDSVCYSVAVTRSRDVPSFGPPIPK
GVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASK
KKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQETKSVVFNCSCRDVIGWTST
DTSLKIFYERGECVSVGSFINIEEIKEIVKRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPY
GYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYKM
NEGVSYEFKFPFRNNNKWQRNASKGPHSPQVPSQVQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGR
PLERRLSPGSDIYVTVSSMALARSQCRNSPSNLSSSSDTGSVGGTYRQKSMPEGFGVSRRSPASIDRQNT
QSDIGGSGKSTPSWQRSEDSIADQMEPTCHLPAVSKVLPAFRESPSGRLMRQDPVVHLSPNKQGHSDSHY
SSHSSSNTLSSNASSAHSDEKWYDGDRTESELNSYNYLQGTSADSGIDTTSYGPSHGSTASLGAATSSPR
SGPGKEKVAPLWHSSSEVISMADRTLETESHGLDRKTESSLSLDIHSKSQAGSTPLTRENSTFSINDAAS
HTSTMSSRHSASPVVFTSARSSPKEELHPAAPSQLAPSFSSSSSSSSGPRSFYPRQGATSKYLIGWKKPE
GTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLRASPKPTSKSTIEEDLKKLIDLESPTPESQKSFKFH
ALSSPQSPFPSTPTSRRALHRTLSDESIYNSQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRP
SYTLGMKSLHGEFSASDSSLTDIQETRRQPMPDPGLMPLPDTAADLDWSNLVDAAKAYEVQRASFFAASD
ENHRPLSAASNSDQLEDQALAQMKPYSSSKDSSPTLASKVDQLEGMLKMLREDLKKEKEDKAHLQAEVQH
LREDNLRLQEESQNASDKLKKFTEWVFNTIDMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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