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Report for CCDS5921.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5921.2 Public Homo sapiens 7 ASB10 24 110 108 CCDS HistoryNCBI Gene:136371Re-query CCDS DB by CCDS ID:5921.2Re-query CCDS DB by GeneID:136371See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5921.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5921.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377867.7 ENSP00000367098.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377867.7Link to Ensembl Protein Viewer:ENSP00000367098.3Re-query CCDS DB by Nucleotide ID:ENST00000377867Re-query CCDS DB by Protein ID:ENSP00000367098
Original member Current member NCBI NM_080871.4 NP_543147.2 Accepted alive Link to Nucleotide Sequence:NM_080871.4Link to Protein Sequence:NP_543147.2Re-query CCDS DB by Nucleotide ID:NM_080871Re-query CCDS DB by Protein ID:NP_543147Link to BLAST:NP_543147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543147.2 452 Q8WXI3-3 452 100% 0 0

Chromosomal Locations for CCDS 5921.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151176112 151176297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151176563 151176676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151180939 151181458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151186392 151186659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151187452 151187722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCCCTGGGGAAAGAACTCCTCTCCCCACTGGGGACACCATCTGGGGTGCCTTCCCTCCGCCCCGGCCT
GCCGGATCTGGAGGCCCCACTCCCGCCCAGCCTGGGAGCCCCCTCGGCCATCACCACTGCTCTGCCAAGA
CATGGCCCTGCAGAATGCCCTCTACACCGGGGACCTGGCAAGGTTGCAGGAGCTGTTCCCCCCGCACAGC
ACAGCCGACCTGCTGCTGGAGAGCCGGGCCGCAGAGCCTCGCTGGAGCAGCCACCAGAGGGGACTCTGGT
CTCTGACATACGAAGAGGAGCTGACCACCCCACTGCATGTGGCAGCCAGCCGTGGCCACACGGAAGTCCT
GCGGCTGCTGCTGAGGCGGCGAGCAAGGCCAGACAGTGCCCCTGGGGGCCGCACCGCCCTGCACGAGGCC
TGTGCTGCAGGCCACACTGCCTGTGTTCATGTGCTGCTGGTGGCAGGAGCCGACCCCAACATCGCTGACC
AGGATGGGAAACGCCCCCTGCATCTCTGCCGGGGGCCTGGCACCCTTGAGTGTGCGGAGCTGCTCCTCAG
GTTTGGAGCGAGAGTGGATGGTCGGTCCGAGGAAGAAGAGGAGACCCCTTTGCATGTGGCCGCCCGGCTT
GGCCATGTGGAGCTGGCAGATCTGCTTCTAAGACGGGGGGCATGTCCTGATGCCCGCAATGCCGAAGGCT
GGACCCCACTGCTGGCTGCCTGTGACGTCCGCTGCCAGTCCATCACCGATGCCGAGGCCACCACCGCCCG
CTGCCTGCAGCTGTGCAGCTTGCTGCTTTCAGCTGGAGCAGACGCTGATGCTGCGGACCAGGACAAGCAG
CGACCCCTGCACCTGGCCTGCCGCCGTGGCCATGCAGCTGTCGTGGAGCTGCTCCTGTCCTGTGGTGTCA
GCGCCAACACCATGGACTATGGGGGACACACGCCCCTGCACTGTGCTCTGCAGGGCCCAGCTGCAGCCCT
GGCCCAGAGCCCCGAGCACGTGGTTCGGGCTCTGCTCAACCATGGCGCCGTCCGTGTCTGGCCAGGGGCC
CTCCCCAAGGTGCTGGAGCGCTGGAGCACGTGCCCTCGGACCATCGAGGTCCTGATGAACACCTACAGTG
TTGTGCAGCTTCCCGAGGAGGCCGTCGGCCTGGTGACTCCTGAAACTCTGCAGAAACATCAGCGTTTCTA
CTCCTCCCTCTTCGCCTTGGTGAGGCAGCCCAGGTCGCTGCAGCATTTGAGCCGCTGTGCGCTCCGCTCC
CACCTGGAGGGCAGCCTGCCCCAAGCGCTGCCCCGCCTCCCCCTGCCACCGCGCCTGCTCCGCTACCTGC
AGCTGGATTTTGAGGGCGTGCTCTACTAG

Translation (452 aa):
MPWGKNSSPHWGHHLGCLPSAPACRIWRPHSRPAWEPPRPSPLLCQDMALQNALYTGDLARLQELFPPHS
TADLLLESRAAEPRWSSHQRGLWSLTYEEELTTPLHVAASRGHTEVLRLLLRRRARPDSAPGGRTALHEA
CAAGHTACVHVLLVAGADPNIADQDGKRPLHLCRGPGTLECAELLLRFGARVDGRSEEEEETPLHVAARL
GHVELADLLLRRGACPDARNAEGWTPLLAACDVRCQSITDAEATTARCLQLCSLLLSAGADADAADQDKQ
RPLHLACRRGHAAVVELLLSCGVSANTMDYGGHTPLHCALQGPAAALAQSPEHVVRALLNHGAVRVWPGA
LPKVLERWSTCPRTIEVLMNTYSVVQLPEEAVGLVTPETLQKHQRFYSSLFALVRQPRSLQHLSRCALRS
HLEGSLPQALPRLPLPPRLLRYLQLDFEGVLY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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