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Report for CCDS58962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58962.1 Public Homo sapiens 5 SSBP2 24 110 108 CCDS HistoryNCBI Gene:23635Re-query CCDS DB by CCDS ID:58962.1Re-query CCDS DB by GeneID:23635See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515395.5 ENSP00000424657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515395.5Link to Ensembl Protein Viewer:ENSP00000424657.1Re-query CCDS DB by Nucleotide ID:ENST00000515395Re-query CCDS DB by Protein ID:ENSP00000424657
Original member Current member NCBI NM_001256734.3 NP_001243663.1 Accepted alive Link to Nucleotide Sequence:NM_001256734.3Link to Protein Sequence:NP_001243663.1Re-query CCDS DB by Nucleotide ID:NM_001256734Re-query CCDS DB by Protein ID:NP_001243663Link to BLAST:NP_001243663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243663.1 339 P81877-5 339 100% 0 0

Chromosomal Locations for CCDS 58962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 81420504 81420533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81428585 81428683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81437430 81437458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81440558 81440636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81442653 81442723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81446868 81446922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81448790 81448825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81461055 81461103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81466974 81467065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81473700 81473770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81474496 81474562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81489250 81489309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81615473 81615557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81636557 81636618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81650267 81650339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81750981 81751042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGTACGGCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTTAGCAC
TCTACGTATATGAATATCTGCTCCATGTAGGAGCTCAGAAATCAGCTCAAACATTTTTATCAGAGATAAG
ATGGGAAAAAAACATCACATTGGGGGAACCACCAGGATTCTTACATTCTTGGTGGTGTGTATTTTGGGAT
CTCTACTGTGCAGCTCCAGAGAGACGTGAAACATGTGAACACTCAAGTGAAGCAAAAGCCTTCCATGATT
ACCCTTTTATGTCACCTCGGTACCCTGGAGGTCCAAGGCCCCCATTGAGGATACCTAATCAGGCACTTGG
AGGTGTCCCAGGAAGTCAGCCATTACTCCCCAGTGGAATGGATCCAACTCGACAACAAGGACATCCAAAT
ATGGGTGGGCCAATGCAGAGAATGACTCCTCCAAGAGGAATGGTGCCCTTAGGACCACAGTCTGACCCTT
GGTTATCATTACAGAACTATGGAGGTGCAATGAGACCCCCACTGAATGCTTTAGGTGGCCCTGGAATGCC
TGGAATGAACATGGGTCCAGGTGGTGGTAGACCTTGGCCAAACCCAACAAATGCCAATTCAATACCATAC
TCCTCAGCATCTCCTGGGAATTATGTAGGTCCTCCAGGAGGTGGAGGGCCACCAGGAACACCCATCATGC
CTAGTCCAGCAGATTCAACCAACTCTGGTGATAACATGTATACTTTAATGAATGCAGTACCTCCTGGACC
TAACAGACCTAATTTTCCAATGGGTCCTGGGTCAGATGGTCCCATGGGTGGATTAGGAGGAATGGAGTCA
CATCACATGAATGGCTCTTTAGGCTCAGGAGATATGGACAGTATTTCCAAGAATTCTCCCAATAATATGA
GCCTGAGTAATCAACCGGGCACTCCAAGGGATGATGGCGAAATGGGGGGAAATTTCTTAAATCCTTTTCA
GAGTGAGAGTTACTCCCCTAGCATGACAATGAGCGTGTGA

Translation (339 aa):
MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWD
LYCAAPERRETCEHSSEAKAFHDYPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPN
MGGPMQRMTPPRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMES
HHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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