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Report for CCDS582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
582.1 Public Homo sapiens 1 GLIS1 24 110 108 CCDS HistoryNCBI Gene:148979Re-query CCDS DB by CCDS ID:582.1Re-query CCDS DB by GeneID:148979See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312233.4 ENSP00000309653.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312233.4Link to Ensembl Protein Viewer:ENSP00000309653.2Re-query CCDS DB by Nucleotide ID:ENST00000312233Re-query CCDS DB by Protein ID:ENSP00000309653
Original member Current member NCBI NM_147193.4 NP_671726.2 Accepted alive Link to Nucleotide Sequence:NM_147193.4Link to Protein Sequence:NP_671726.2Re-query CCDS DB by Nucleotide ID:NM_147193Re-query CCDS DB by Protein ID:NP_671726Link to BLAST:NP_671726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671726.2 620 Q8NBF1 620 100% 0 0

Chromosomal Locations for CCDS 582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53506619 53506776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53509120 53509287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53509849 53510027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53514625 53514781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53520634 53520766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53524777 53524887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53529791 53529952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53594108 53594902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGCAGAGGCCCGCACATCCCTGTCTGCCCACTGTCGGGGCCCGCTGGCCACTGGCCTGCACCCAGACC
TGGACCTCCCGGGCCGAAGCCTCGCCACCCCTGCGCCTTCCTGCTACCTTCTGGGCAGCGAACCCAGCTC
TGGCCTGGGCCTCCAGCCCGAGACCCACCTCCCCGAGGGCAGCCTGAAGCGGTGCTGCGTCTTGGGCCTA
CCCCCCACCTCCCCAGCCTCCTCCTCACCCTGTGCCTCCTCCGACGTCACCTCCATCATCCGCTCCTCCC
AGACGTCTCTGGTCACCTGTGTAAATGGACTCCGGAGCCCCCCTCTGACGGGAGATCTGGGGGGCCCTTC
CAAGCGGGCCCGGCCTGGCCCTGCATCGACGGACAGCCATGAGGGCAGCTTGCAACTTGAAGCCTGCCGG
AAGGCGAGCTTCCTGAAGCAGGAACCCGCGGATGAGTTTTCAGAGCTCTTTGGGCCTCACCAGCAGGGCC
TGCCGCCCCCCTATCCCCTGTCTCAGTTGCCGCCTGGCCCAAGCCTTGGAGGCCTGGGGCTGGGCCTGGC
AGGCAGGGTGGTGGCCGGGCGGCAGGCGTGCCGCTGGGTGGACTGCTGTGCAGCCTATGAGCAGCAGGAG
GAGCTGGTGCGGCACATCGAGAAGAGCCACATCGACCAGCGCAAGGGCGAGGACTTCACCTGCTTCTGGG
CTGGCTGCGTGCGCCGCTACAAGCCCTTCAACGCCCGCTACAAGCTGCTCATCCACATGCGAGTGCACTC
GGGCGAGAAGCCCAACAAGTGCATGTTTGAAGGCTGCAGCAAGGCCTTCTCACGGCTGGAGAACCTCAAG
ATCCACCTGAGGAGCCACACGGGCGAGAAGCCGTACCTGTGCCAGCACCCGGGTTGCCAGAAGGCCTTCA
GCAACTCCAGCGACCGCGCCAAGCACCAGCGCACCCACCTAGACACGAAGCCGTACGCCTGTCAGATCCC
TGGCTGCTCCAAGCGCTACACAGACCCCAGCTCCCTCCGCAAGCACGTCAAGGCCCATTCAGCCAAAGAG
CAGCAGGTGCGTAAGAAGCTGCATGCGGGCCCTGACACCGAGGCCGACGTCCTGACCGAGTGTCTGGTCC
TGCAGCAGCTCCACACGTCCACACAGCTGGCTGCCAGCGACGGCAAGGGTGGCTGTGGCCTGGGCCAGGA
GCTGCTCCCAGGTGTGTATCCTGGCTCCATCACCCCCCATAACGGACTTGCATCGGGCCTCCTGCCCCCA
GCGCACGACGTACCTTCCAGGCACCACCCGCTGGATGCCACCACCAGTTCCCACCACCATCTGTCCCCTC
TGCCCATGGCTGAGAGCACCCGGGATGGGTTGGGGCCCGGCCTCCTCTCACCAATAGTCAGCCCCCTGAA
GGGGCTGGGGCCACCGCCGCTGCCCCCATCCTCTCAGAGCCATTCTCCGGGGGGCCAGCCCTTCCCCACA
CTCCCCAGCAAGCCGTCCTACCCACCCTTCCAGAGCCCTCCACCCCCGCCTCTGCCCAGCCCACAAGGTT
ACCAGGGCAGTTTCCACTCCATCCAGAGTTGCTTCCCCTATGGCGACTGCTACCGGATGGCTGAACCAGC
AGCCGGTGGGGACGGACTGGTCGGGGAGACCCACGGTTTCAACCCCCTGCGGCCCAATGGCTACCACAGC
CTCAGCACGCCCTTGCCTGCCACAGGCTATGAGGCCCTGGCTGAGGCCTCATGCCCCACAGCGCTGCCAC
AGCAGCCATCTGAAGATGTGGTGTCCAGCGGCCCCGAGGACTGTGGCTTCTTCCCCAATGGAGCCTTTGA
CCACTGCCTGGGCCACATCCCCTCCATCTACACAGACACCTGA

Translation (620 aa):
MAEARTSLSAHCRGPLATGLHPDLDLPGRSLATPAPSCYLLGSEPSSGLGLQPETHLPEGSLKRCCVLGL
PPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLRSPPLTGDLGGPSKRARPGPASTDSHEGSLQLEACR
KASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPPGPSLGGLGLGLAGRVVAGRQACRWVDCCAAYEQQE
ELVRHIEKSHIDQRKGEDFTCFWAGCVRRYKPFNARYKLLIHMRVHSGEKPNKCMFEGCSKAFSRLENLK
IHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCSKRYTDPSSLRKHVKAHSAKE
QQVRKKLHAGPDTEADVLTECLVLQQLHTSTQLAASDGKGGCGLGQELLPGVYPGSITPHNGLASGLLPP
AHDVPSRHHPLDATTSSHHHLSPLPMAESTRDGLGPGLLSPIVSPLKGLGPPPLPPSSQSHSPGGQPFPT
LPSKPSYPPFQSPPPPPLPSPQGYQGSFHSIQSCFPYGDCYRMAEPAAGGDGLVGETHGFNPLRPNGYHS
LSTPLPATGYEALAEASCPTALPQQPSEDVVSSGPEDCGFFPNGAFDHCLGHIPSIYTDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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