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Report for CCDS5765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5765.1 Public Homo sapiens 7 CAV2 24 110 108 CCDS HistoryNCBI Gene:858Re-query CCDS DB by CCDS ID:5765.1Re-query CCDS DB by GeneID:858See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343213.2 ENSP00000345679.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343213.2Link to Ensembl Protein Viewer:ENSP00000345679.2Re-query CCDS DB by Nucleotide ID:ENST00000343213Re-query CCDS DB by Protein ID:ENSP00000345679
Original member Current member NCBI NM_198212.3 NP_937855.1 Accepted alive Link to Nucleotide Sequence:NM_198212.3Link to Protein Sequence:NP_937855.1Re-query CCDS DB by Nucleotide ID:NM_198212Re-query CCDS DB by Protein ID:NP_937855Link to BLAST:NP_937855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937855.1 112 P51636-3 112 100% 0 0

Chromosomal Locations for CCDS 5765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 116499782 116499931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116505971 116506159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGGGCTGGAGACGGAGAAGGCGGACGTACAGCTCTTCATGGACGACGACTCCTACAGCCACCACAGCG
GCCTCGAGTACGCCGACCCCGAGAAGTTCGCGGACTCGGACCAGGACCGGGATCCCCACCGGCTCAACTC
GCATCTCAAGGATTTTAATGCCTTTTGTAAAGACCTGCCTAATGGTTCTGCCTTCAGTGCAGACAATATG
GAAGAGTGTGACAGATGTTATCATTGCTCCATTGTGTACGAGCGTAGGACGATGCTTCTCTTCTGTCAGC
CTGCAACTGAGCCAGGATTGAATACTTGGACCCCAGGTCTGGAGATTGGGATACTGTAA

Translation (112 aa):
MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKDFNAFCKDLPNGSAFSADNM
EECDRCYHCSIVYERRTMLLFCQPATEPGLNTWTPGLEIGIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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