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Report for CCDS5578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5578.1 Public Homo sapiens 7 CCL26 24 110 108 CCDS HistoryNCBI Gene:10344Re-query CCDS DB by CCDS ID:5578.1Re-query CCDS DB by GeneID:10344See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000005180.9 ENSP00000005180.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000005180.9Link to Ensembl Protein Viewer:ENSP00000005180.4Re-query CCDS DB by Nucleotide ID:ENST00000005180Re-query CCDS DB by Protein ID:ENSP00000005180
Original member Current member EBI ENST00000394905.2 ENSP00000378365.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394905.2Link to Ensembl Protein Viewer:ENSP00000378365.2Re-query CCDS DB by Nucleotide ID:ENST00000394905Re-query CCDS DB by Protein ID:ENSP00000378365
Original member Current member NCBI NM_001371936.1 NP_001358865.1 Accepted alive Link to Nucleotide Sequence:NM_001371936.1Link to Protein Sequence:NP_001358865.1Re-query CCDS DB by Nucleotide ID:NM_001371936Re-query CCDS DB by Protein ID:NP_001358865Link to BLAST:NP_001358865.1
Original member Current member NCBI NM_001371938.1 NP_001358867.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371938.1Link to Protein Sequence:NP_001358867.1Re-query CCDS DB by Nucleotide ID:NM_001371938Re-query CCDS DB by Protein ID:NP_001358867Link to BLAST:NP_001358867.1
Original member Current member NCBI NM_006072.4 NP_006063.1 Accepted alive Link to Nucleotide Sequence:NM_006072.4Link to Protein Sequence:NP_006063.1Re-query CCDS DB by Nucleotide ID:NM_006072Re-query CCDS DB by Protein ID:NP_006063Link to BLAST:NP_006063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358865.1 94 Q9Y258 94 100% 0 0
NP_001358867.1 94 Q9Y258 94 100% 0 0
NP_006063.1 94 Q9Y258 94 100% 0 0

Chromosomal Locations for CCDS 5578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75769693 75769789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75771889 75772003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75772104 75772176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGATGGGCCTCTCCTTGGCCTCTGCTGTGCTCCTGGCCTCCCTCCTGAGTCTCCACCTTGGAACTGCCA
CACGTGGGAGTGACATATCCAAGACCTGCTGCTTCCAATACAGCCACAAGCCCCTTCCCTGGACCTGGGT
GCGAAGCTATGAATTCACCAGTAACAGCTGCTCCCAGCGGGCTGTGATATTCACTACCAAAAGAGGCAAG
AAAGTCTGTACCCATCCAAGGAAAAAATGGGTGCAAAAATACATTTCTTTACTGAAAACTCCGAAACAAT
TGTGA

Translation (94 aa):
MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGK
KVCTHPRKKWVQKYISLLKTPKQL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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