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Report for CCDS55761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55761.1 Public Homo sapiens 11 ATG13 24 110 108 CCDS HistoryNCBI Gene:9776Re-query CCDS DB by CCDS ID:55761.1Re-query CCDS DB by GeneID:9776See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55761.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530500.5 ENSP00000434390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530500.5Link to Ensembl Protein Viewer:ENSP00000434390.1Re-query CCDS DB by Nucleotide ID:ENST00000530500Re-query CCDS DB by Protein ID:ENSP00000434390
Original member Current member NCBI NM_001205122.2 NP_001192051.1 Accepted alive Link to Nucleotide Sequence:NM_001205122.2Link to Protein Sequence:NP_001192051.1Re-query CCDS DB by Nucleotide ID:NM_001205122Re-query CCDS DB by Protein ID:NP_001192051Link to BLAST:NP_001192051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192051.1 401 O75143-4 401 100% 0 0

Chromosomal Locations for CCDS 55761.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46645957 46645989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46649137 46649183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46650177 46650317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46656233 46656273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657095 46657191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657524 46657622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46659392 46659485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46665383 46665519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46667773 46667887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668499 46668576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668794 46668910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46669404 46669532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46672255 46672332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCATGGAGCTGGAAATATGGTGTCTTGAAA
TGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGTGTACAACAGACTGTCATTGCTGCTGAA
GTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTCTCCAGGAAACAAGGGCATGAATATGTC
ATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCTTAGGAGAAGGCTTCCAGACAGTTCGTG
TTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTGTGCTTACAGAATTAACTTGGCATTCAT
GTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATTATTATTGATCACTTTGTGGACCGTCCC
TATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTGCTGGTGAGGACACTGGAGTAATATACC
CGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTCCACCTCCCCACCATCCCAGCTGATGGT
TCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCTGTCCATGGTACCCAGGCTGACCAGGAG
AGACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTGCCACACCCTCCAGTAGTGAGGATACTG
AAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGATGTCTTGGAGACCATCTTTGTCCGAAA
AGTGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTGACGAGTTTGGATATACCCTTTGCCATG
TTTGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGGTGAATCCTCCAGATTCCCCAGAGACTG
AATCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGGGGGCAGCAGTGGCAATACCCATGATGA
CTTTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGACATTCTTCCGATGGACCTGGGGACCTTC
TATCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCATAGATATTGGAGCACAGTCCATGGCTG
AAGACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAAGAATGTCCGCGAGTTTGATGCCTTTGT
GGAAACCCTGCAGTAA

Translation (401 aa):
MCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYV
ILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRP
YPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQE
RLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAM
FAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTF
YREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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