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Report for CCDS54552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54552.1 Public Homo sapiens 3 IL17RE 24 110 108 CCDS HistoryNCBI Gene:132014Re-query CCDS DB by CCDS ID:54552.1Re-query CCDS DB by GeneID:132014See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454190.6 ENSP00000388086.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454190.6Link to Ensembl Protein Viewer:ENSP00000388086.2Re-query CCDS DB by Nucleotide ID:ENST00000454190Re-query CCDS DB by Protein ID:ENSP00000388086
Original member Current member NCBI NM_001193380.2 NP_001180309.1 Accepted alive Link to Nucleotide Sequence:NM_001193380.2Link to Protein Sequence:NP_001180309.1Re-query CCDS DB by Nucleotide ID:NM_001193380Re-query CCDS DB by Protein ID:NP_001180309Link to BLAST:NP_001180309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180309.1 533 Q8NFR9-3 533 100% 0 0

Chromosomal Locations for CCDS 54552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9902933 9903064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9903397 9903412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9904032 9904151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9906364 9906461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9906706 9906865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9906961 9907100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9908239 9908307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9909217 9909283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9910865 9911040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9911127 9911174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9911255 9911300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9911443 9911597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9913956 9914024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9914475 9914599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9914679 9914777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9915251 9915332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGGGAGCTCCAGACTGGCAGCCCTGCTCCTGCCTCTCCTCCTCATAGTCATCGACCTCTCTGACTCTG
CTGGGATTGGCTTTCGCCACCTGCCCCACTGGAACACCCGCTGTCCTCTGGCCTCCCACACGGATGACAG
TTTCACTGGAAGTTCTGCCTATATCCCTTGCCGCACCTGGTGGGCCCTCTTCTCCACAAAGCCTTGGTGT
GTGCGAGTCTGGCACTGTTCCCGCTGTTTGTGCCAGCATCTGCTGTCAGGTGGCTCAGGTCTTCAACGGG
GCCTCTTCCACCTCCTGGTGCAGAAATCCAAAAAGTCTTCCACATTCAAGTTCTATAGGAGACACAAGAT
GCCAGCACCTGCTCAGAGGAAGCTGCTGCCTCGTCGTCACCTGTCTGAGAAGAGCCATCACATTTCCATC
CCCTCCCCAGACATCTCCCACAAGGGACTTCGCTCTAAAAGGACCCAACCTTCGGATCCAGAGACATGGG
AAAGTCTTCCCAGATTGGACTCACAAAGGCATGGAGGACCCGAGTTCTCCTTTGATTTGCTGCCTGAGGC
CCGGGCTATTCGGGTGACCATATCTTCAGGCCCTGAGGTCAGCGTGCGTCTTTGTCACCAGTGGGCACTG
GAGTGTGAAGAGCTGAGCAGTCCCTATGATGTCCAGAAAATTGTGTCTGGGGGCCACACTGTAGAGCTGC
CTTATGAATTCCTTCTGCCCTGTCTGTGCATAGAGGCATCCTACCTGCAAGAGGACACTGTGAGGCGCAA
AAAATGTCCCTTCCAGAGCTGGCCAGAAGCCTATGGCTCGGACTTCTGGAAGTCAGTGCACTTCACTGAC
TACAGCCAGCACACTCAGATGGTCATGGCCCTGACACTCCGCTGCCCACTGAAGCTGGAAGCTGCCCTCT
GCCAGAGGCACGACTGGCATACCCTTTGCAAAGACCTCCCGAATGCCACAGCTCGAGAGTCAGATGGGTG
GTATGTTTTGGAGAAGGTGGACCTGCACCCCCAGCTCTGCTTCAAGTTCTCTTTTGGAAACAGCAGCCAT
GTTGAATGCCCCCACCAGACTGGGTCTCTCACATCCTGGAATGTAAGCATGGATACCCAAGCCCAGCAGC
TGATTCTTCACTTCTCCTCAAGAATGCATGCCACCTTCAGTGCTGCCTGGAGCCTCCCAGGCTTGGGGCA
GGACACTTTGGTGCCCCCCGTGTACACTGTCAGCCAGGCCCGGGGCTCAAGCCCAGTGTCACTAGACCTC
ATCATTCCCTTCCTGAGGCCAGGGTGCTGTGTCCTGCTCCATGCTTCACTCAGCTCCCCGGGAGGAGAAG
ATGCCTGGCTCATAGGGGTGGGGGGCTCTGTGCCCTCAGGTGTGGCGGTCAGATGTCCAGTTTGCCTGGA
AGCACCTCTTGTGTCCGGATGTCTCTTACAGACACCTGGGGCTCTTGATCCTGGCACTGCTGGCCCTCCT
CACCCTACTGGGTGTTGTTCTGGCCCTCACCTGCCGGCGCCCACAGTCAGGCCCGGGCCCAGCGCGGCCA
GTGCTCCTCCTGCACGCGGCGGACTCGGAGGCGCAGCGGCGCCTGGTGGGAGCGCTGGCTGA

Translation (533 aa):
MGSSRLAALLLPLLLIVIDLSDSAGIGFRHLPHWNTRCPLASHTDDSFTGSSAYIPCRTWWALFSTKPWC
VRVWHCSRCLCQHLLSGGSGLQRGLFHLLVQKSKKSSTFKFYRRHKMPAPAQRKLLPRRHLSEKSHHISI
PSPDISHKGLRSKRTQPSDPETWESLPRLDSQRHGGPEFSFDLLPEARAIRVTISSGPEVSVRLCHQWAL
ECEELSSPYDVQKIVSGGHTVELPYEFLLPCLCIEASYLQEDTVRRKKCPFQSWPEAYGSDFWKSVHFTD
YSQHTQMVMALTLRCPLKLEAALCQRHDWHTLCKDLPNATARESDGWYVLEKVDLHPQLCFKFSFGNSSH
VECPHQTGSLTSWNVSMDTQAQQLILHFSSRMHATFSAAWSLPGLGQDTLVPPVYTVSQARGSSPVSLDL
IIPFLRPGCCVLLHASLSSPGGEDAWLIGVGGSVPSGVAVRCPVCLEAPLVSGCLLQTPGALDPGTAGPP
HPTGCCSGPHLPAPTVRPGPSAASAPPARGGLGGAAAPGGSAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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