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Report for CCDS54149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54149.1 Public Homo sapiens 17 LPO 24 110 108 CCDS HistoryNCBI Gene:4025Re-query CCDS DB by CCDS ID:54149.1Re-query CCDS DB by GeneID:4025See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421678.6 ENSP00000400245.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421678.6Link to Ensembl Protein Viewer:ENSP00000400245.2Re-query CCDS DB by Nucleotide ID:ENST00000421678Re-query CCDS DB by Protein ID:ENSP00000400245
Original member Current member EBI ENST00000582328.5 ENSP00000464636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000582328.5Link to Ensembl Protein Viewer:ENSP00000464636.1Re-query CCDS DB by Nucleotide ID:ENST00000582328Re-query CCDS DB by Protein ID:ENSP00000464636
Original member Current member NCBI NM_001160102.2 NP_001153574.1 Accepted alive Link to Nucleotide Sequence:NM_001160102.2Link to Protein Sequence:NP_001153574.1Re-query CCDS DB by Nucleotide ID:NM_001160102Re-query CCDS DB by Protein ID:NP_001153574Link to BLAST:NP_001153574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153574.1 629 P22079-2 629 100% 0 0

Chromosomal Locations for CCDS 54149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58242980 58243055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58249060 58249177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58249566 58249695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58250415 58250621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58252182 58252506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58254811 58254971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58264722 58264974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58266153 58266326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58267349 58267586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58267787 58267994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGAGGGTCCTTCTCCATCTCCCAGCCCTCCTGGCTTCCCTCATCTTGCTTCAGGCTGCAGCATCTACCA
CAAGAGATCCCAGCCTGGACTTGACTTCACTGTCTCTGGAGGTGGGCTGTGGTGCTCCTGCTCCCGTGGT
GAGATGCGACCCGTGCAGCCCTTACCGCACCATTACGGGAGACTGCAATAACAGGAGGAAGCCTGCGCTG
GGCGCCGCCAACAGGGCTCTGGCGCGCTGGCTGCCCGCGGAGTACGAGGACGGGCTCTCCCTGCCCTTCG
GCTGGACGCCGGGGAAGACGCGCAACGGCTTCCCTCTCCCGCTGGCCCGGGAGGTATCTAACAAGATTGT
TGGCTATCTGAATGAGGAGGGTGTTCTGGACCAAAACAGGTCCCTGCTCTTCATGCAGTGGGGTCAGATT
GTGGATCATGACCTGGACTTTGCCCCTGACACCGAGCTGGGGAGTAGCGAGTACTCCAAAGCCCAGTGTG
ATGAGTACTGTATCCAGGGAGACAACTGCTTCCCCATCATGTTCCCACCCAATGACCCCAAGGCGGGGAC
TCAAGGGAAATGCATGCCTTTCTTCCGAGCTGGGTTCGTCTGCCCCACTCCACCCTACAAGTCCCTGGCC
CGAGAGCAGATCAACGCTCTGACCTCCTTCCTGGATGCCAGCTTTGTGTACAGCTCCGAGCCAAGCCTGG
CCAGCCGCCTCCGCAACCTCAGCAGCCCCCTGGGCCTCATGGCTGTCAACCAGGAGGTCTCAGACCATGG
ACTACCCTACCTGCCCTATGACAGCAAGAAGCCAAGCCCCTGTGAGTTCATCAACACCACTGCCCGTGTG
CCCTGCTTCCTGGCAGGAGATTCTCGAGCCTCAGAGCATATTCTGCTGGCCACATCCCACACCCTCTTTC
TCCGCGAGCATAACCGGCTGGCCAGAGAACTAAAGAGACTCAACCCTCAGTGGGATGGAGAGAAGCTCTA
CCAGGAAGCCCGGAAAATCCTGGGAGCCTTCGTGCAGATTATCACCTTTAGGGACTACCTACCCATTTTG
CTAGGTGACCACATGCAGAAGTGGATACCCCCATATCAAGGCTACAGTGAATCTGTGGATCCCAGAATTT
CCAATGTCTTCACCTTCGCCTTCCGCTTTGGCCACTTGGAGGTCCCCTCTAGTATGTTCCGCCTGGATGA
GAATTATCAGCCATGGGGGCCAGAACCAGAACTCCCCCTCCACACCCTCTTCTTCAACACTTGGAGGATG
GTCAAAGATGGTGGAATTGATCCTCTGGTGCGGGGCCTGCTGGCCAAGAAATCCAAGCTGATGAAACAGA
ATAAAATGATGACTGGAGAGCTGCGCAACAAGCTTTTCCAGCCAACTCACAGGATCCATGGCTTTGACCT
GGCTGCCATCAACACACAGCGTTGCCGGGACCATGGGCAACCTGGGTACAATTCCTGGAGAGCCTTCTGT
GACCTCTCACAGCCGCAGACACTAGAGGAGTTGAACACAGTGCTGAAGAGCAAGATGCTGGCCAAGAAGT
TACTGGGTCTCTACGGGACCCCTGACAACATCGACATCTGGATAGGGGCCATTGCTGAGCCGCTGGTGGA
AAGGGGTCGGGTGGGGCCTCTCCTGGCCTGCCTCTTGGGCAAGCAGTTCCAGCAGATCCGTGATGGAGAC
AGGTTCTGGTGGGAAAACCCTGGGGTCTTCACGAACGAGCAGAAGGACTCTCTACAGAAAATGTCCTTCT
CACGCCTTGTCTGTGACAACACCCGCATCACCAAGGTCCCACGGGACCCATTCTGGGCCAACAGCTACCC
CTATGACTTCGTGGATTGCTCAGCCATCGACAAGCTGGACCTGTCACCCTGGGCCTCAGTGAAGAATTAG

Translation (629 aa):
MRVLLHLPALLASLILLQAAASTTRDPSLDLTSLSLEVGCGAPAPVVRCDPCSPYRTITGDCNNRRKPAL
GAANRALARWLPAEYEDGLSLPFGWTPGKTRNGFPLPLAREVSNKIVGYLNEEGVLDQNRSLLFMQWGQI
VDHDLDFAPDTELGSSEYSKAQCDEYCIQGDNCFPIMFPPNDPKAGTQGKCMPFFRAGFVCPTPPYKSLA
REQINALTSFLDASFVYSSEPSLASRLRNLSSPLGLMAVNQEVSDHGLPYLPYDSKKPSPCEFINTTARV
PCFLAGDSRASEHILLATSHTLFLREHNRLARELKRLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIL
LGDHMQKWIPPYQGYSESVDPRISNVFTFAFRFGHLEVPSSMFRLDENYQPWGPEPELPLHTLFFNTWRM
VKDGGIDPLVRGLLAKKSKLMKQNKMMTGELRNKLFQPTHRIHGFDLAAINTQRCRDHGQPGYNSWRAFC
DLSQPQTLEELNTVLKSKMLAKKLLGLYGTPDNIDIWIGAIAEPLVERGRVGPLLACLLGKQFQQIRDGD
RFWWENPGVFTNEQKDSLQKMSFSRLVCDNTRITKVPRDPFWANSYPYDFVDCSAIDKLDLSPWASVKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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