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Report for CCDS54074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54074.1 Public Homo sapiens 17 INCA1 24 110 108 CCDS HistoryNCBI Gene:388324Re-query CCDS DB by CCDS ID:54074.1Re-query CCDS DB by GeneID:388324See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000574617.1 ENSP00000458316.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574617.1Link to Ensembl Protein Viewer:ENSP00000458316.1Re-query CCDS DB by Nucleotide ID:ENST00000574617Re-query CCDS DB by Protein ID:ENSP00000458316
Original member Current member EBI ENST00000576820.5 ENSP00000460673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576820.5Link to Ensembl Protein Viewer:ENSP00000460673.1Re-query CCDS DB by Nucleotide ID:ENST00000576820Re-query CCDS DB by Protein ID:ENSP00000460673
Original member Current member EBI ENST00000695324.1 ENSP00000511805.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695324.1Link to Ensembl Protein Viewer:ENSP00000511805.1Re-query CCDS DB by Nucleotide ID:ENST00000695324Re-query CCDS DB by Protein ID:ENSP00000511805
Original member Current member NCBI NM_001167986.2 NP_001161458.1 Accepted alive Link to Nucleotide Sequence:NM_001167986.2Link to Protein Sequence:NP_001161458.1Re-query CCDS DB by Nucleotide ID:NM_001167986Re-query CCDS DB by Protein ID:NP_001161458Link to BLAST:NP_001161458.1
Original member Current member NCBI NM_001167987.2 NP_001161459.1 Accepted alive Link to Nucleotide Sequence:NM_001167987.2Link to Protein Sequence:NP_001161459.1Re-query CCDS DB by Nucleotide ID:NM_001167987Re-query CCDS DB by Protein ID:NP_001161459Link to BLAST:NP_001161459.1
Original member Current member NCBI NM_001394788.1 NP_001381717.1 Accepted alive Link to Nucleotide Sequence:NM_001394788.1Link to Protein Sequence:NP_001381717.1Re-query CCDS DB by Nucleotide ID:NM_001394788Re-query CCDS DB by Protein ID:NP_001381717Link to BLAST:NP_001381717.1
Original member Current member NCBI NM_001394789.1 NP_001381718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394789.1Link to Protein Sequence:NP_001381718.1Re-query CCDS DB by Nucleotide ID:NM_001394789Re-query CCDS DB by Protein ID:NP_001381718Link to BLAST:NP_001381718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161458.1 236 Q0VD86-1 236 100% 0 0
NP_001161459.1 236 Q0VD86-1 236 100% 0 0
NP_001381717.1 236 Q0VD86-1 236 100% 0 0
NP_001381718.1 236 Q0VD86-1 236 100% 0 0

Chromosomal Locations for CCDS 54074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4988405 4988554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4988779 4988944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4989428 4989624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4989890 4989929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4990152 4990265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4994394 4994437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGCAGGTGCAGGATGATGGAGTCAACCTCATCCCCTTTGCCAAGTGTTCCAGGGTGGTCAGCCGATCTC
CACCCCCAAGGTTGCCTTCCCAGAGCCTCAGACCCATGCCCCAGCGTTATGGAGATGTCTTCTGGAAGAA
CCTTAATCAAAGGCCCACCCCCACTTGGCTGGAGGAGCAGCACATTCCACCCATGCTGAGAGCCACTGGT
TGCTCCCAGCTTGGTCTGTATCCTCCTGAGCAGCTCCCACCCCCTGAAATGCTTTGGAGAAGAAAGAAGA
GGAGGCCATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGTCCCCGCCCGGGTGAGGGCTGTCAC
TTACCACCTGGAGGACCTAAGAAGGCGTCAGAGCATCATCAACGAACTGAAGAAGGCCCAGTGGGGCAGC
TCTGGGGCTGCATCTGAGCCAGTGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACC
CTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCCCA
GCTGCTTTGGTCTCCCTGGAGCCCCCTGGATCAGGAGGAGGCTTGTGCCTCCAGGCAGCTGCACTCTCTG
GCCTCGTTCAGCACTGTCACAGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGATGGAGTTGGCAGCGT
CTGAAGAGTAA

Translation (236 aa):
MQVQDDGVNLIPFAKCSRVVSRSPPPRLPSQSLRPMPQRYGDVFWKNLNQRPTPTWLEEQHIPPMLRATG
CSQLGLYPPEQLPPPEMLWRRKKRRPCLEGMQQQGLGGVPARVRAVTYHLEDLRRRQSIINELKKAQWGS
SGAASEPVVLGEEGCGFPSTNEYPDLEEERATYPQEEDRFLTPGRAQLLWSPWSPLDQEEACASRQLHSL
ASFSTVTARRNPLHNPWGMELAASEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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