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Report for CCDS534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
534.1 Public Homo sapiens 1 NSUN4 24 110 108 CCDS HistoryNCBI Gene:387338Re-query CCDS DB by CCDS ID:534.1Re-query CCDS DB by GeneID:387338See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474844.6 ENSP00000419740.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000474844.6Link to Ensembl Protein Viewer:ENSP00000419740.1Re-query CCDS DB by Nucleotide ID:ENST00000474844Re-query CCDS DB by Protein ID:ENSP00000419740
Original member Current member NCBI NM_199044.4 NP_950245.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199044.4Link to Protein Sequence:NP_950245.2Re-query CCDS DB by Nucleotide ID:NM_199044Re-query CCDS DB by Protein ID:NP_950245Link to BLAST:NP_950245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950245.2 384 Q96CB9-1 384 100% 0 0

Chromosomal Locations for CCDS 534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46340827 46340919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46344801 46345144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46346921 46347075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46352868 46353028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46360704 46360828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46361570 46361846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGCTGCGCTGACACTGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGA
GACATCGATATAAGAAGAAATGGGCTGCCACAGAGCCCAAATTCCCTGCTGTTCGACTGGCTTTGCAGAA
TTTTGACATGACTTACAGTGTGCAGTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAG
CAGAAGTATGGTGCACTGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGA
GTGCCAAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGC
CCCATCCCCTGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGT
CGCTTCCCTCCTGCCAGACCTGGCAGCCTGGGTGTCATGGAGTACTACCTGATGGATGCTGCCTCCTTGC
TGCCTGTTCTGGCCCTCGGCCTGCAGCCTGGGGACATCGTGCTTGACCTATGTGCAGCTCCTGGGGGAAA
GACACTAGCGTTGCTTCAGACTGGCTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATA
GCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTA
CCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCC
CTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAG
CGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAGGAGGCC
ATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAGCT
CCTGGCCAATCAATACAGCATCCAGGTACAGGTGGAAGATCTGACTCACTTCCGAAGGGTTTTCATGGAC
ACATTTTGTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAAACCTCATGGCCAATTTTGGCC
CCATGTACTTCTGCAAAATGCGTAGGCTGACATAG

Translation (384 aa):
MAALTLRGVRELLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSE
QKYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDIS
RFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI
ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKE
RQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMD
TFCFFSSCQVGELVIPNLMANFGPMYFCKMRRLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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