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Report for CCDS5227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5227.1 Public Homo sapiens 6 IYD 24 110 108 CCDS HistoryNCBI Gene:389434Re-query CCDS DB by CCDS ID:5227.1Re-query CCDS DB by GeneID:389434See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344419.8 ENSP00000343763.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344419.8Link to Ensembl Protein Viewer:ENSP00000343763.4Re-query CCDS DB by Nucleotide ID:ENST00000344419Re-query CCDS DB by Protein ID:ENSP00000343763
Original member Current member NCBI NM_203395.3 NP_981932.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203395.3Link to Protein Sequence:NP_981932.1Re-query CCDS DB by Nucleotide ID:NM_203395Re-query CCDS DB by Protein ID:NP_981932Link to BLAST:NP_981932.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_981932.1 289 Q6PHW0-1 289 100% 0 0

Chromosomal Locations for CCDS 5227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 150369032 150369209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150389352 150389543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150392345 150392504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150394099 150394255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150398055 150398237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGTATTTCCTGACTCCCATCTTGGTAGCCATTCTCTGCATTTTGGTTGTGTGGATCTTTAAAAATGCCG
ACAGAAGCATGGAGAAAAAGAAGGGGGAGCCTAGAACCAGGGCCGAAGCTCGCCCCTGGGTGGATGAAGA
CTTAAAAGACAGCAGTGACCTGCACCAAGCAGAAGAAGATGCTGATGAATGGCAAGAATCAGAAGAAAAT
GTTGAACACATCCCCTTCTCTCATAACCACTATCCTGAGAAGGAAATGGTTAAGAGGTCTCAGGAATTTT
ATGAACTTCTCAATAAGAGACGGTCAGTCAGGTTCATAAGTAATGAGCAAGTCCCAATGGAAGTCATTGA
TAATGTCATCAGAACGGCAGGAACAGCCCCGAGTGGGGCTCACACAGAGCCCTGGACCTTCGTGGTTGTG
AAGGACCCAGACGTGAAGCACAAGATTCGAAAGATCATTGAGGAGGAAGAGGAGATCAACTACATGAAAA
GGATGGGACATCGCTGGGTCACAGACCTCAAGAAACTGAGAACCAACTGGATTAAAGAGTACTTGGATAC
TGCCCCTATTTTGATTCTCATTTTCAAACAAGTACATGGTTTCGCCGCAAATGGCAAGAAAAAAGTCCAC
TACTACAATGAGATCAGTGTTTCCATCGCTTGTGGCATCCTGCTAGCTGCCCTGCAGAATGCAGGTCTGG
TGACTGTCACTACCACTCCTCTCAACTGTGGCCCTCGACTGAGGGTGCTCCTGGGCCGCCCCGCACATGA
AAAGCTGCTGATGCTGCTCCCCGTGGGGTACCCCAGCAAGGAGGCCACGGTGCCTGACCTCAAGCGCAAA
CCTCTGGACCAGATCATGGTGACAGTGTAG

Translation (289 aa):
MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEEDADEWQESEEN
VEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVIRTAGTAPSGAHTEPWTFVVV
KDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKKVH
YYNEISVSIACGILLAALQNAGLVTVTTTPLNCGPRLRVLLGRPAHEKLLMLLPVGYPSKEATVPDLKRK
PLDQIMVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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