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Report for CCDS5013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5013.1 Public Homo sapiens 6 AKIRIN2 24 110 108 CCDS HistoryNCBI Gene:55122Re-query CCDS DB by CCDS ID:5013.1Re-query CCDS DB by GeneID:55122See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257787.6 ENSP00000257787.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257787.6Link to Ensembl Protein Viewer:ENSP00000257787.5Re-query CCDS DB by Nucleotide ID:ENST00000257787Re-query CCDS DB by Protein ID:ENSP00000257787
Original member Current member NCBI NM_018064.4 NP_060534.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018064.4Link to Protein Sequence:NP_060534.1Re-query CCDS DB by Nucleotide ID:NM_018064Re-query CCDS DB by Protein ID:NP_060534Link to BLAST:NP_060534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060534.1 203 Q53H80 203 100% 0 0

Chromosomal Locations for CCDS 5013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87675597 87675607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87675860 87675931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87677818 87677967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87681620 87681763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87701450 87701684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGTGCGGAGCCACTCTGAAAAGGACTCTGGATTTCGACCCGCTGTTGAGCCCGGCGTCCCCGAAGC
GCAGGCGATGTGCGCCATTGTCGGCGCCCACCTCGGCCGCTGCCTCCCCGTTGTCGGCGGCCGCGGCCAC
CGCCGCCTCCTTCTCCGCTGCGGCCGCCTCGCCGCAGAAGTATCTCCGAATGGAGCCATCCCCCTTCGGC
GACGTCTCCTCCCGCCTCACCACAGAACAAATTCTGTACAACATAAAACAAGAGTATAAACGAATGCAGA
AGAGAAGACATTTAGAAACGAGTTTCCAACAGACAGATCCGTGTTGTACTTCTGATGCACAGCCACATGC
ATTTCTCCTCAGTGGACCAGCTTCACCAGGGACTTCATCTGCAGCATCCTCACCATTAAAAAAAGAACAG
CCCTTATTTACTCTACGGCAGGTTGGGATGATCTGTGAACGTTTGTTGAAAGAACGTGAAGAGAAAGTTC
GAGAAGAATATGAAGAAATATTGAACACAAAACTTGCAGAACAATATGATGCGTTTGTGAAGTTTACGCA
TGATCAAATAATGCGACGATATGGAGAACAGCCTGCTAGCTATGTTTCATGA

Translation (203 aa):
MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFG
DVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLLSGPASPGTSSAASSPLKKEQ
PLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFTHDQIMRRYGEQPASYVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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