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Report for CCDS5000.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5000.2 Public Homo sapiens 6 CYB5R4 24 110 108 CCDS HistoryNCBI Gene:51167Re-query CCDS DB by CCDS ID:5000.2Re-query CCDS DB by GeneID:51167See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5000.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369681.10 ENSP00000358695.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369681.10Link to Ensembl Protein Viewer:ENSP00000358695.3Re-query CCDS DB by Nucleotide ID:ENST00000369681Re-query CCDS DB by Protein ID:ENSP00000358695
Original member Current member NCBI NM_016230.4 NP_057314.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016230.4Link to Protein Sequence:NP_057314.2Re-query CCDS DB by Nucleotide ID:NM_016230Re-query CCDS DB by Protein ID:NP_057314Link to BLAST:NP_057314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057314.2 521 Q7L1T6 521 100% 0 0

Chromosomal Locations for CCDS 5000.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83859783 83859857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83864175 83864328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83893522 83893622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83909009 83909090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83914416 83914448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83918005 83918065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83919397 83919454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83921082 83921175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83922438 83922470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83924470 83924592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83934595 83934735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83936224 83936376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83940056 83940206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83940515 83940601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83955298 83955462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83959824 83959878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGCTGAACGTCCCTTCCCAGTCTTTCCCGGCCCCCAGGTCGCAGCAGCGTGTCGCCTCCGGGGGGCGTA
GCAAGGTACCTTTAAAACAGGGCAGAAGCCTTATGGATTGGATTCGACTGACCAAAAGTGGAAAGGATCT
AACGGGATTAAAAGGCAGGTTAATTGAAGTAACTGAAGAAGAACTTAAGAAACACAACAAAAAAGATGAT
TGTTGGATATGCATAAGAGGTTTCGTTTATAATGTCAGCCCTTATATGGAGTATCATCCTGGTGGAGAAG
ATGAACTAATGAGAGCAGCAGGATCAGATGGTACTGAACTTTTTGATCAGGTTCATCGTTGGGTCAATTA
TGAATCCATGCTGAAAGAATGCCTGGTTGGCAGAATGGCCATTAAACCTGCTGTTCTGAAAGACTATCGT
GAGGAGGAAAAGAAAGTCTTAAATGGCATGCTTCCCAAGAGCCAAGTGACAGATACACTTGCCAAAGAAG
GTCCTAGTTATCCAAGCTATGATTGGTTCCAAACAGACTCTTTAGTCACCATTGCCATATATACTAAACA
GAAGGATATCAATTTAGACTCAATAATAGTTGATCATCAGAATGATTCCTTTAGAGCAGAAACAATTATT
AAGGATTGTTTATATCTTATACATATTGGGCTAAGCCATGAGGTTCAGGAAGATTTTTCTGTGCGGGTTG
TTGAGAGTGTGGGAAAAATAGAGATTGTTCTACAAAAAAAAGAGAATACTTCTTGGGACTTTCTTGGCCA
TCCCCTGAAGAATCATAATTCACTTATTCCAAGGAAAGATACAGGTTTGTACTACAGAAAGTGCCAGTTA
ATTTCCAAGGAAGATGTTACTCATGATACGAGGCTTTTCTGTTTGATGCTGCCACCAAGCACTCATCTTC
AAGTGCCCATTGGGCAACATGTTTACCTCAAGCTACCTATTACAGGTACAGAAATAGTAAAGCCATATAC
ACCTGTATCTGGTTCCTTACTCTCAGAGTTCAAGGAACCAGTTCTTCCCAACAATAAATACATCTACTTT
TTGATAAAAATCTATCCCACTGGACTCTTCACACCAGAGCTTGATCGTCTTCAGATTGGAGATTTTGTTT
CTGTAAGCAGTCCTGAGGGCAATTTTAAAATATCCAAGTTCCAAGAATTAGAAGATCTCTTTTTGTTGGC
AGCTGGAACAGGCTTCACACCAATGGTTAAAATACTGAATTATGCTTTGACTGATATACCCAGTCTCAGG
AAAGTGAAGCTGATGTTCTTCAATAAAACAGAAGATGATATAATTTGGAGAAGCCAATTGGAGAAATTAG
CATTTAAAGATAAAAGACTGGATGTTGAATTTGTTCTCTCAGCACCTATTTCTGAATGGAATGGCAAACA
GGGACATATTTCACCAGCTCTTCTTTCTGAATTTTTGAAAAGAAATTTGGACAAATCCAAAGTTCTCGTC
TGCATTTGTGGACCAGTGCCATTTACAGAACAAGGAGTAAGGTTGCTGCATGATCTCAACTTTTCCAAAA
ATGAGATCCATAGTTTTACAGCATAA

Translation (521 aa):
MLNVPSQSFPAPRSQQRVASGGRSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIEVTEEELKKHNKKDD
CWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAIKPAVLKDYR
EEEKKVLNGMLPKSQVTDTLAKEGPSYPSYDWFQTDSLVTIAIYTKQKDINLDSIIVDHQNDSFRAETII
KDCLYLIHIGLSHEVQEDFSVRVVESVGKIEIVLQKKENTSWDFLGHPLKNHNSLIPRKDTGLYYRKCQL
ISKEDVTHDTRLFCLMLPPSTHLQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEFKEPVLPNNKYIYF
LIKIYPTGLFTPELDRLQIGDFVSVSSPEGNFKISKFQELEDLFLLAAGTGFTPMVKILNYALTDIPSLR
KVKLMFFNKTEDDIIWRSQLEKLAFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLKRNLDKSKVLV
CICGPVPFTEQGVRLLHDLNFSKNEIHSFTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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