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Report for CCDS47418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47418.1 Public Homo sapiens 6 BTBD9 24 110 108 CCDS HistoryNCBI Gene:114781Re-query CCDS DB by CCDS ID:47418.1Re-query CCDS DB by GeneID:114781See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47418.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000481247.6 ENSP00000418751.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000481247.6Link to Ensembl Protein Viewer:ENSP00000418751.1Re-query CCDS DB by Nucleotide ID:ENST00000481247Re-query CCDS DB by Protein ID:ENSP00000418751
Original member Current member EBI ENST00000649492.1 ENSP00000497066.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649492.1Link to Ensembl Protein Viewer:ENSP00000497066.1Re-query CCDS DB by Nucleotide ID:ENST00000649492Re-query CCDS DB by Protein ID:ENSP00000497066
Original member Current member NCBI NM_001099272.2 NP_001092742.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099272.2Link to Protein Sequence:NP_001092742.1Re-query CCDS DB by Nucleotide ID:NM_001099272Re-query CCDS DB by Protein ID:NP_001092742Link to BLAST:NP_001092742.1
Original member Current member NCBI NM_052893.2 NP_443125.1 Accepted alive Link to Nucleotide Sequence:NM_052893.2Link to Protein Sequence:NP_443125.1Re-query CCDS DB by Nucleotide ID:NM_052893Re-query CCDS DB by Protein ID:NP_443125Link to BLAST:NP_443125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092742.1 612 Q96Q07-1 612 100% 0 0
NP_443125.1 612 Q96Q07-1 612 100% 0 0

Chromosomal Locations for CCDS 47418.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38174985 38175182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38192519 38192597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38256409 38256516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38288272 38288461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38344984 38345093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38577600 38577719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38580218 38580437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38592576 38592840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38593964 38594327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38597910 38598094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGAGTAACAGCCACCCTCTTCGCCCCTTTACTGCAGTGGGGGAAATTGATCATGTGCACATTTTGTCTG
AACATATTGGTGCCTTGTTGATTGGGGAAGAATATGGCGACGTCACATTCGTGGTGGAAAAGAAACGTTT
TCCTGCCCACAGGGTAATTTTAGCAGCCAGGTGCCAATATTTTCGAGCATTATTATATGGTGGAATGCGA
GAGTCTCAGCCTGAAGCAGAAATTCCTCTCCAAGACACCACTGCAGAAGCATTCACAATGCTACTCAAAT
ATATCTACACTGGGCGGGCAACGCTGACAGATGAGAAGGAGGAGGTGCTGCTGGACTTTTTGAGCCTGGC
TCATAAATATGGATTTCCAGAGCTAGAGGATTCTACCTCTGAGTATCTCTGCACCATACTTAACATTCAG
AATGTCTGCATGACTTTTGATGTTGCCAGTCTCTACTCACTTCCCAAGTTAACTTGTATGTGCTGCATGT
TTATGGATAGGAATGCTCAGGAAGTCCTCTCAAGTGAAGGTTTCCTCTCCCTTTCTAAGACAGCACTTTT
AAACATCGTGTTAAGAGACTCATTTGCAGCTCCCGAAAAAGATATTTTCCTAGCCTTATTAAACTGGTGT
AAGCACAATTCAAAGGAGAATCATGCTGAAATCATGCAGGCTGTGCGTTTACCTCTCATGAGCCTCACAG
AGCTTCTGAATGTTGTGAGGCCTTCAGGACTGCTGTCTCCTGATGCCATCCTGGATGCCATTAAAGTGCG
ATCTGAGAGCCGGGATATGGACCTCAATTATAGAGGCATGCTCATACCAGAAGAAAACATTGCAACTATG
AAGTATGGAGCCCAAGTTGTAAAGGGGGAGCTGAAATCAGCCTTATTAGATGGTGATACTCAAAATTATG
ATTTGGATCATGGATTTTCAAGGCACCCAATTGATGATGACTGCCGTTCCGGCATCGAGATTAAGCTAGG
TCAGCCATCCATTATCAATCACATACGGATACTCTTGTGGGACCGAGATAGCCGGTCTTACTCATACTTC
ATTGAAGTGTCAATGGATGAACTTGATTGGGTCAGAGTGATAGATCATTCACAATATCTGTGTCGTTCTT
GGCAGAAATTATATTTTCCAGCCCGTGTCTGCAGGTATATTCGAATTGTTGGGACTCACAACACAGTGAA
CAAGATTTTTCACATTGTGGCTTTTGAATGTATGTTTACAAACAAAACCTTCACTCTTGAGAAGGGGCTG
ATAGTTCCCATGGAGAATGTTGCAACAATTGCTGATTGTGCCAGTGTGATTGAAGGAGTCAGTCGGAGCC
GAAATGCCTTGCTGAATGGGGACACTAAGAATTATGACTGGGATTCTGGCTACACATGTCACCAGCTAGG
AAGTGGTGCGATTGTGGTTCAGTTGGCACAACCGTACATGATTGGGTCAATACGGTTACTACTTTGGGAT
TGTGATGATCGAAGCTATAGCTACTACGTTGAGGTTTCTACCAACCAGCAACAGTGGACCATGGTTGCTG
ACAGAACTAAAGTCTCCTGCAAGTCCTGGCAGTCAGTAACTTTTGAAAGGCAGCCTGCCTCCTTCATCCG
TATCGTTGGGACACACAACACAGCAAATGAGGTGTTCCACTGTGTCCACTTTGAGTGTCCAGAGCAGCAG
AGCAGCCAGAAGGAGGAAAATAGTGAGGAATCGGGGACAGGGGACACCAGCCTGGCCGGTCAGCAGCTCG
ACTCCCATGCGCTGCGGGCGCCTAGTGGCAGCTCACTACCCTCCAGCCCAGGCTCCAACTCACGCTCCCC
CAACCGGCAGCACCAATAA

Translation (612 aa):
MSNSHPLRPFTAVGEIDHVHILSEHIGALLIGEEYGDVTFVVEKKRFPAHRVILAARCQYFRALLYGGMR
ESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLTDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNIQ
NVCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKTALLNIVLRDSFAAPEKDIFLALLNWC
KHNSKENHAEIMQAVRLPLMSLTELLNVVRPSGLLSPDAILDAIKVRSESRDMDLNYRGMLIPEENIATM
KYGAQVVKGELKSALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQPSIINHIRILLWDRDSRSYSYF
IEVSMDELDWVRVIDHSQYLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKTFTLEKGL
IVPMENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYMIGSIRLLLWD
CDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQ
SSQKEENSEESGTGDTSLAGQQLDSHALRAPSGSSLPSSPGSNSRSPNRQHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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