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Report for CCDS47321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47321.1 Public Homo sapiens 5 SAP30L 24 110 108 CCDS HistoryNCBI Gene:79685Re-query CCDS DB by CCDS ID:47321.1Re-query CCDS DB by GeneID:79685See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47321.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440364.6 ENSP00000390927.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440364.6Link to Ensembl Protein Viewer:ENSP00000390927.2Re-query CCDS DB by Nucleotide ID:ENST00000440364Re-query CCDS DB by Protein ID:ENSP00000390927
Original member Current member NCBI NM_001131062.2 NP_001124534.1 Accepted alive Link to Nucleotide Sequence:NM_001131062.2Link to Protein Sequence:NP_001124534.1Re-query CCDS DB by Nucleotide ID:NM_001131062Re-query CCDS DB by Protein ID:NP_001124534Link to BLAST:NP_001124534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124534.1 142 Q9HAJ7-3 142 100% 0 0

Chromosomal Locations for CCDS 47321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154446605 154446805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154453402 154453500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154455900 154456028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGAACGGCTTCAGCACGGAGGAGGACAGCCGCGAAGGGCCCCCCGCCGCCCCAGCTGCCGCCGCCCCGG
GCTACGGCCAGAGCTGCTGCCTCATCGAGGACGGCGAGCGCTGCGTCCGGCCCGCGGGCAACGCCTCCTT
CAGCAAGAGGGTCCAGAAGAGCATCTCGCAGAAGAAACTCAAGCTGGACATCGACAAGAGCGTTGATCTG
TTCCAGCTGCAGGTGAACACCCTACGACGTTATAAACGACACTACAAGTTGCAGACCAGACCAGGCTTCA
ATAAGGCCCAGTTAGCAGAAACTGTGAGTCGACACTTCAGGAACATACCTGTGAATGAAAAAGAGACCCT
TGCCTACTTCATCTACATGGTGAAGAGTAACAAGAGTAGACTGGACCAGAAATCGGAGGGTGGCAAGCAG
CTTGAGTGA

Translation (142 aa):
MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKSVDL
FQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKSEGGKQ
LE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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