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Report for CCDS47065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47065.1 Public Homo sapiens 4 TMPRSS11A 24 110 108 CCDS HistoryNCBI Gene:339967Re-query CCDS DB by CCDS ID:47065.1Re-query CCDS DB by GeneID:339967See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508048.6 ENSP00000426911.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000508048.6Link to Ensembl Protein Viewer:ENSP00000426911.2Re-query CCDS DB by Nucleotide ID:ENST00000508048Re-query CCDS DB by Protein ID:ENSP00000426911
Original member Current member NCBI NM_001114387.2 NP_001107859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114387.2Link to Protein Sequence:NP_001107859.1Re-query CCDS DB by Nucleotide ID:NM_001114387Re-query CCDS DB by Protein ID:NP_001107859Link to BLAST:NP_001107859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107859.1 418 Q6ZMR5-2 418 100% 0 0

Chromosomal Locations for CCDS 47065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 67911342 67911503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67914588 67914730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67918973 67919232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67922755 67922926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67924128 67924166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67929880 67930040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67931993 67932060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67944519 67944637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67946450 67946571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67963383 67963393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGATGTATCGGACAGTGGGATTTGGCACCCGAAGCAGAAATCTGAAGCCATGGATGATTGCCGTTCTCA
TTGTGTTGTCCCTGACAGTGGTGGCAGTGACCATAGGTCTCCTGGTTCACTTCCTAGTATTTGACCAAAA
AAAGGAGTACTATCATGGCTCCTTTAAAATTTTAGATCCACAAATCAATAACAATTTCGGACAAAGCAAC
ACATATCAACTTAAGGACTTACGAGAGACGACCGAAAATTTGGTGGATGAGATATTTATAGATTCAGCCT
GGAAGAAAAATTATATCAAGAACCAAGTAGTCAGACTGACTCCAGAGGAAGATGGTGTGAAAGTAGATGT
CATTATGGTGTTCCAGTTCCCCTCTACTGAACAAAGGGCAGTAAGAGAGAAGAAAATCCAAAGCATCTTA
AATCAGAAGATAAGGAATTTAAGAGCCTTGCCAATAAATGCCTCATCAGTTCAAGTTAATGCAATGAGCT
CATCAACAGGGGAGTTAACTGTCCAAGCAAGTTGTGGTAAACGAGTTGTTCCATTAAACGTCAACAGAAT
AGCATCTGGAGTCATTGCACCCAAGGCGGCCTGGCCTTGGCAAGCTTCCCTTCAGTATGATAACATCCAT
CAGTGTGGGGCCACCTTGATTAGTAACACATGGCTTGTCACTGCAGCACACTGCTTCCAGAAGTATAAAA
ATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAATGTCAGAAG
ATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAGGTCTCTTCC
AGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCCAACCAAATT
TGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTGGGGAATCCCAAAATGATCTCCGAGAAGC
CAGAGTGAAAATCATAAGTGATGATGTCTGCAAGCAACCACAGGTGTATGGCAATGATATAAAACCTGGA
ATGTTCTGTGCCGGATATATGGAAGGAATTTATGATGCCTGCAGGGGTGATTCTGGGGGACCTTTAGTCA
CAAGGGATCTGAAAGATACGTGGTATCTCATTGGAATTGTAAGCTGGGGAGATAACTGTGGTCAAAAGGA
CAAGCCTGGAGTCTACACACAAGTGACTTATTACCGAAACTGGATTGCTTCAAAAACAGGCATCTAA

Translation (418 aa):
MMYRTVGFGTRSRNLKPWMIAVLIVLSLTVVAVTIGLLVHFLVFDQKKEYYHGSFKILDPQINNNFGQSN
TYQLKDLRETTENLVDEIFIDSAWKKNYIKNQVVRLTPEEDGVKVDVIMVFQFPSTEQRAVREKKIQSIL
NQKIRNLRALPINASSVQVNAMSSSTGELTVQASCGKRVVPLNVNRIASGVIAPKAAWPWQASLQYDNIH
QCGATLISNTWLVTAAHCFQKYKNPHQWTVSFGTKINPPLMKRNVRRFIIHEKYRSAAREYDIAVVQVSS
RVTFSDDIRQICLPEASASFQPNLTVHITGFGALYYGGESQNDLREARVKIISDDVCKQPQVYGNDIKPG
MFCAGYMEGIYDACRGDSGGPLVTRDLKDTWYLIGIVSWGDNCGQKDKPGVYTQVTYYRNWIASKTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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