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Report for CCDS47027.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47027.2 Public Homo sapiens 4 CC2D2A 24 110 108 CCDS HistoryNCBI Gene:57545Re-query CCDS DB by CCDS ID:47027.2Re-query CCDS DB by GeneID:57545See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 47027.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. This CCDS ID represents a short variant from this locus; the full-length variant is represented by CCDS47026.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47027.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503658.2 ENSP00000426846.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503658.2Link to Ensembl Protein Viewer:ENSP00000426846.1Re-query CCDS DB by Nucleotide ID:ENST00000503658Re-query CCDS DB by Protein ID:ENSP00000426846
Original member Current member NCBI NM_020785.2 NP_065836.2 Accepted alive Link to Nucleotide Sequence:NM_020785.2Link to Protein Sequence:NP_065836.2Re-query CCDS DB by Nucleotide ID:NM_020785Re-query CCDS DB by Protein ID:NP_065836Link to BLAST:NP_065836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065836.2 122 Q9P2K1-5 122 100% 0 0

Chromosomal Locations for CCDS 47027.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15475933 15475971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15478723 15478806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15479223 15479328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15480704 15480827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15481197 15481212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGAATCCCAGGGAAGAAAAAGTAAAAATAATTACAGAGGAGTTCATTGAAAATGATGAGGATGCAGACA
TGGGAAGACAGAATAAGAACTCAAAGGTTCGAAGACAGCCAAGAAAGAAACAGAAGCCAACTCCTTTCTC
CCGAGCCTGCTGGCAGATCCTCCCCCACCTCTCCGCAGGAGTTCCCCTCCTAGGCTGGGAGCATCCCGTG
CAGGGTAAATCTTTTCAAGCCACCAACTGCTGTCCCCAAGGAAATGGTGTCCGAAAAATCCCACCTTGGC
AACCCCCAGGAGCCTGTGCAGGAGGAGCCCAAGACCCGCCTCCTGAGTATGACAGTCCGGAGAGGCCCAC
GGAGAGAGCTGGTTGTTAA

Translation (122 aa):
MNPREEKVKIITEEFIENDEDADMGRQNKNSKVRRQPRKKQKPTPFSRACWQILPHLSAGVPLLGWEHPV
QGKSFQATNCCPQGNGVRKIPPWQPPGACAGGAQDPPPEYDSPERPTERAGC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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