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Report for CCDS46914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46914.1 Public Homo sapiens 3 ATP2C1 24 110 108 CCDS HistoryNCBI Gene:27032Re-query CCDS DB by CCDS ID:46914.1Re-query CCDS DB by GeneID:27032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428331.6 ENSP00000395809.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428331.6Link to Ensembl Protein Viewer:ENSP00000395809.2Re-query CCDS DB by Nucleotide ID:ENST00000428331Re-query CCDS DB by Protein ID:ENSP00000395809
Original member Current member EBI ENST00000508532.5 ENSP00000424783.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508532.5Link to Ensembl Protein Viewer:ENSP00000424783.1Re-query CCDS DB by Nucleotide ID:ENST00000508532Re-query CCDS DB by Protein ID:ENSP00000424783
Original member Current member EBI ENST00000510168.6 ENSP00000427461.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000510168.6Link to Ensembl Protein Viewer:ENSP00000427461.1Re-query CCDS DB by Nucleotide ID:ENST00000510168Re-query CCDS DB by Protein ID:ENSP00000427461
Original member Current member NCBI NM_001199179.3 NP_001186108.1 Accepted alive Link to Nucleotide Sequence:NM_001199179.3Link to Protein Sequence:NP_001186108.1Re-query CCDS DB by Nucleotide ID:NM_001199179Re-query CCDS DB by Protein ID:NP_001186108Link to BLAST:NP_001186108.1
Original member Current member NCBI NM_001378687.1 NP_001365616.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378687.1Link to Protein Sequence:NP_001365616.1Re-query CCDS DB by Nucleotide ID:NM_001378687Re-query CCDS DB by Protein ID:NP_001365616Link to BLAST:NP_001365616.1
Original member Current member NCBI NM_014382.5 NP_055197.2 Accepted alive Link to Nucleotide Sequence:NM_014382.5Link to Protein Sequence:NP_055197.2Re-query CCDS DB by Nucleotide ID:NM_014382Re-query CCDS DB by Protein ID:NP_055197Link to BLAST:NP_055197.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186108.1 919 P98194-1 919 100% 0 0
NP_001365616.1 919 P98194-1 919 100% 0 0
NP_055197.2 919 P98194-1 919 100% 0 0

Chromosomal Locations for CCDS 46914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 130894770 130894775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130930416 130930526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130932022 130932138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130934622 130934711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130937428 130937463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130940630 130940691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130941591 130941699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130953821 130953976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130955012 130955080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130956104 130956179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130959275 130959341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130963971 130964095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130964948 130965045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967145 130967240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967330 130967419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130969292 130969396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130975332 130975488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130979249 130979419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130980582 130980679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130992951 130993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130993932 130994098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996043 130996111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996680 130996796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130997606 130997753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130998294 130998389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130999518 130999659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131001220 131001350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGAAGGTTGCACGTTTTCAAAAAATACCTAATGGTGAAAATGAGACAATGATTCCTGTATTGACATCAA
AA
AAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGCATTCTCCAAGCTGATCTTCAGAATGGTCTAAA
C
AAATGTGAAGTTAGTCATAGGCGAGCCTTTCATGGCTGGAATGAGTTTGATATTAGTGAAGATGAGCCA
CTG
TGGAAGAAGTATATTTCTCAGTTTAAAAATCCCCTTATTATGCTGCTTCTGGCTTCTGCAGTCATCA
GT
GTTTTAATGCATCAGTTTGATGATGCCGTCAGTATCACTGTGGCAATACTTATCGTTGTTACAGTTGC
C
TTTGTTCAGGAATATCGTTCAGAAAAATCTCTTGAAGAATTGAGTAAACTTGTGCCACCAGAATGCCAT
TG
T
GTGCGTGAAGGAAAATTGGAGCATACACTTGCCCGAGACTTGGTTCCAGGTGATACAGTTTGCCTTT
CT
GTTGGGGATAGAGTTCCTGCTGACTTACGCTTGTTTGAGGCTGTGGATCTTTCCATTGATGAGTCCAG
C
TTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGAGATCTT
GCA
TCGAGAAGTAACATTGCCTTTATGGGAACACTGGTCAGATGTGGCAAAGCAAAGGGTGTTGTCATTG
GA
ACAGGAGAAAATTCTGAATTTGGGGAGGTTTTTAAAATGATGCAAGCAGAAGAGGCACCAAAAACCCC
T
CTGCAGAAGAGCATGGACCTCTTAGGAAAACAACTTTCCTTTTACTCCTTTGGTATAATAGGAATCATC
ATG
TTGGTTGGCTGGTTACTGGGAAAAGATATCCTGGAAATGTTTACTATTAGTGTAAGTTTGGCTGTAG
CA
GCAATTCCTGAAGGTCTCCCCATTGTGGTCACAGTGACGCTAGCTCTTGGTGTTATGAGAATGGTGAA
G
AAAAGGGCCATTGTGAAAAAGCTGCCTATTGTTGAAACTCTGGGCTGCTGTAATGTGATTTGTTCAGAT
AAA
ACTGGAACACTGACGAAGAATGAAATGACTGTTACTCACATATTTACTTCAGATGGTCTGCATGCTG
AG
GTTACTGGAGTTGGCTATAATCAATTTGGGGAAGTGATTGTTGATGGTGATGTTGTTCATGGATTCTA
T
AACCCAGCTGTTAGCAGAATTGTTGAGGCGGGCTGTGTGTGCAATGATGCTGTAATTAGAAACAATACT
CTA
ATGGGGAAGCCAACAGAAGGGGCCTTAATTGCTCTTGCAATGAAGATGGGTCTTGATGGACTTCAAC
AA
GACTACATCAGAAAAGCTGAATACCCTTTTAGCTCTGAGCAAAAGTGGATGGCTGTTAAGTGTGTACA
C
CGAACACAGCAGGACAGACCAGAGATTTGTTTTATGAAAGGTGCTTACGAACAAGTAATTAAGTACTGT
ACT
ACATACCAGAGCAAAGGGCAGACCTTGACACTTACTCAGCAGCAGAGAGATGTGTACCAACAAGAGA
AG
GCACGCATGGGCTCAGCGGGACTCAGAGTTCTTGCTTTGGCTTCTGGTCCTGAACTGGGACAGCTGAC
A
TTTCTTGGCTTGGTGGGAATCATTGATCCACCTAGAACTGGTGTGAAAGAAGCTGTTACAACACTCATT
GCC
TCAGGAGTATCAATAAAAATGATTACTGGAGATTCACAGGAGACTGCAGTTGCAATCGCCAGTCGTC
TG
GGATTGTATTCCAAAACTTCCCAGTCAGTCTCAGGAGAAGAAATAGATGCAATGGATGTTCAGCAGCT
T
TCACAAATAGTACCAAAGGTTGCAGTATTTTACAGAGCTAGCCCAAGGCACAAGATGAAAATTATTAAG
TCG
CTACAGAAGAACGGTTCAGTTGTAGCCATGACAGGAGATGGAGTAAATGATGCAGTTGCTCTGAAGG
CT
GCAGACATTGGAGTTGCGATGGGCCAGACTGGTACAGATGTTTGCAAAGAGGCAGCAGACATGATCCT
A
GTGGATGATGATTTTCAAACCATAATGTCTGCAATCGAAGAGGGTAAAGGGATTTATAATAACATTAAA
AAT
TTCGTTAGATTCCAGCTGAGCACGAGTATAGCAGCATTAACTTTAATCTCATTGGCTACATTAATGA
AC
TTTCCTAATCCTCTCAATGCCATGCAGATTTTGTGGATCAATATTATTATGGATGGACCCCCAGCTCA
G
AGCCTTGGAGTAGAACCAGTGGATAAAGATGTCATTCGTAAACCTCCTCGCAACTGGAAAGACAGCATT
TTG
ACTAAAAACTTGATACTTAAAATACTTGTTTCATCAATAATCATTGTTTGTGGGACTTTGTTTGTCT
TC
TGGCGTGAGCTACGAGACAATGTGATTACACCTCGAGACACAACAATGACCTTCACATGCTTTGTGTT
T
TTTGACATGTTCAATGCACTAAGTTCCAGATCCCAGACCAAGTCTGTGTTTGAGATTGGACTCTGCAGT
AAT
AGAATGTTTTGCTATGCAGTTCTTGGATCCATCATGGGACAATTACTAGTTATTTACTTTCCTCCGC
TT
CAGAAGGTTTTTCAGACTGAGAGCCTAAGCATACTGGATCTGTTGTTTCTTTTGGGTCTCACCTCATC
A
GTGTGCATAGTGGCAGAAATTATAAAGAAGGTTGAAAGGAGCAGGGAAAAGATCCAGAAGCATGTTAGT
TCG
ACATCATCATCTTTTCTTGAAGTATGA


Translation (919 aa):
MKVARFQKIPNGENETMIPVLTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEP
L
WKKYISQ
FKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECH
C
VREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDL
A
SRSNIAFMGTLVRCGKAK
GVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGIIGII
M
LVGWLLGKDILEMFTISV
SLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKKLPIVETLGCCNVICSD
K
TGTLTKNEMTVTHIFTSDGLHAE
VTGVGYNQFGEVIVDGDVVHGFYNPAVSRIVEAGCVCNDAVIRNNT
L
MGKPTEGALIALAMK
MGLDGLQQDYIRKAEYPFSSEQKWMAVKCVHRTQQDRPEICFMKGAYEQVIKYC
T
TYQSKGQTLTLTQQQRDVYQQEKARMGSAGLR
VLALASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLI
A
SGVSIKMITGDSQETAVAI
ASRLGLYSKTSQSVSGEEIDAMDVQQLSQIVPKVAVFYRASPRHKMKIIK
S
LQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTI
MSAIEEGKGIYNNIK
N
FVRFQLS
TSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSI
L
TKNLILKILVSSIIIVCGTLFVFWRE
LRDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCS
N
RMFCYAVLGSIMGQLLVIYFPPLQKVFQTESLSIL
DLLFLLGLTSSVCIVAEIIKKVERSREKIQKHVS
S
TSSSFLEV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser