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Report for CCDS46891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46891.1 Public Homo sapiens 3 IGSF11 24 110 108 CCDS HistoryNCBI Gene:152404Re-query CCDS DB by CCDS ID:46891.1Re-query CCDS DB by GeneID:152404See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46891.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393775.7 ENSP00000377370.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393775.7Link to Ensembl Protein Viewer:ENSP00000377370.2Re-query CCDS DB by Nucleotide ID:ENST00000393775Re-query CCDS DB by Protein ID:ENSP00000377370
Original member Current member NCBI NM_001015887.3 NP_001015887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001015887.3Link to Protein Sequence:NP_001015887.1Re-query CCDS DB by Nucleotide ID:NM_001015887Re-query CCDS DB by Protein ID:NP_001015887Link to BLAST:NP_001015887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015887.1 431 Q5DX21-1 431 100% 0 0

Chromosomal Locations for CCDS 46891.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 118902520 118902961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118904648 118904798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118905596 118905718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118926101 118926256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118928509 118928716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118930112 118930275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119034531 119034582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGACTTCTCAGCGTTCCCCTCTGGCGCCTTTGCTGCTCCTCTCTCTGCACGGTGTTGCAGCATCCCTGG
AAGTGTCAGAGAGCCCTGGGAGTATCCAGGTGGCCCGGGGTCAGCCAGCAGTCCTGCCCTGCACTTTCAC
TACCAGCGCTGCCCTCATTAACCTCAATGTCATTTGGATGGTCACTCCTCTCTCCAATGCCAACCAACCT
GAACAGGTCATCCTGTATCAGGGTGGACAGATGTTTGATGGTGCCCCCCGGTTCCACGGTAGGGTAGGAT
TTACAGGCACCATGCCAGCTACCAATGTCTCTATCTTCATTAATAACACTCAGTTATCAGACACTGGCAC
CTACCAGTGCCTGGTCAACAACCTTCCAGACATAGGGGGCAGGAACATTGGGGTCACCGGTCTCACAGTG
TTAGTTCCCCCTTCTGCCCCACACTGCCAAATCCAAGGATCCCAGGATATTGGCAGCGATGTCATCCTGC
TCTGTAGCTCAGAGGAAGGCATTCCTCGACCAACTTACCTTTGGGAGAAGTTAGACAATACCCTCAAACT
ACCTCCAACAGCTACTCAGGACCAGGTCCAGGGAACAGTCACCATCCGGAACATCAGTGCCCTGTCTTCA
GGTTTGTACCAGTGCGTGGCTTCTAATGCTATTGGAACCAGCACCTGTCTTCTGGATCTCCAGGTTATTT
CACCCCAGCCCAGGAACATTGGACTAATAGCTGGAGCCATTGGCACTGGTGCAGTTATTATCATTTTTTG
CATTGCACTAATTTTAGGGGCATTCTTTTACTGGAGAAGCAAAAATAAAGAGGAGGAAGAAGAAGAAATT
CCTAATGAAATAAGAGAGGATGATCTTCCACCCAAGTGTTCTTCTGCCAAAGCATTTCACACTGAGATTT
CCTCCTCGGACAACAACACACTAACCTCTTCCAATGCCTACAACAGTCGATACTGGAGCAACAATCCAAA
AGTTCATAGAAACACAGAGTCAGTCAGCCACTTCAGTGACTTGGGCCAATCTTTCTCTTTCCACTCAGGC
AATGCCAACATACCATCCATTTATGCTAATGGGACCCATCTGGTCCCGGGTCAACATAAGACTCTGGTAG
TGACAGCCAACAGAGGGTCATCACCACAGGTGATGTCCAGGAGCAATGGCTCAGTCAGTAGGAAGCCTCG
GCCTCCACACACTCATTCCTACACCATCAGCCACGCAACACTGGAACGAATTGGTGCAGTACCTGTCATG
GTACCAGCCCAGAGTCGGGCCGGGTCCTTGGTATAG

Translation (431 aa):
MTSQRSPLAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQP
EQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPDIGGRNIGVTGLTV
LVPPSAPHCQIQGSQDIGSDVILLCSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSS
GLYQCVASNAIGTSTCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEI
PNEIREDDLPPKCSSAKAFHTEISSSDNNTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQSFSFHSG
NANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHSYTISHATLERIGAVPVM
VPAQSRAGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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