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Report for CCDS45545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45545.1 Public Homo sapiens 16 CTU2 24 110 108 CCDS HistoryNCBI Gene:348180Re-query CCDS DB by CCDS ID:45545.1Re-query CCDS DB by GeneID:348180See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453996.7 ENSP00000388320.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453996.7Link to Ensembl Protein Viewer:ENSP00000388320.2Re-query CCDS DB by Nucleotide ID:ENST00000453996Re-query CCDS DB by Protein ID:ENSP00000388320
Original member Current member NCBI NM_001012759.3 NP_001012777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012759.3Link to Protein Sequence:NP_001012777.1Re-query CCDS DB by Nucleotide ID:NM_001012759Re-query CCDS DB by Protein ID:NP_001012777Link to BLAST:NP_001012777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012777.1 515 Q2VPK5-1 515 100% 0 0

Chromosomal Locations for CCDS 45545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88706531 88706598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88707136 88707210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88709938 88710016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88710223 88710282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88711635 88711695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88712274 88712383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88712622 88712905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88713312 88713447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88713647 88713778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88714136 88714227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88714383 88714486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88714587 88714737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88714860 88714926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88715048 88715106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88715182 88715251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGTGTCAGGTGGGCGAGGACTACGGGGAGCCGGCGCCTGAGGAGCCGCCCCCGGCGCCGCGGCCCAGCC
GTGAGCAGAAGTGTGTGAAGTGCAAGGAAGCGCAGCCCGTTGTGGTGATACGAGCCGGAGATGCCTTCTG
CAGGGACTGTTTCAAGGCCTTCTACGTCCACAAGTTCAGAGCCATGCTGGGCAAGAACCGGCTCATCTTT
CCAGGCGAGAAGGTGCTCTTGGCGTGGTCTGGGGGGCCTTCGTCCAGCTCCATGGTCTGGCAGGTTCTTG
AGGGCCTGAGCCAAGATTCTGCCAAAAGACTGCGCTTTGTGGCAGGAGTCATCTTTGTTGACGAGGGAGC
AGCCTGTGGCCAGAGCCTAGAGGAGAGATCAAAGACCCTGGCCGAAGTGAAGCCCATTCTGCAAGCAACT
GGGTTCCCATGGCATGTGGTGGCCTTAGAGGAGGTGTTCAGCCTGCCACCGTCGGTGCTTTGGTGCTCTG
CCCAGGAGCTGGTGGGATCCGAGGGGGCCTACAAGGCGGCCGTGGACAGCTTCCTCCAGCAGCAGCATGT
GCTGGGGGCCGGGGGTGGTCCTGGCCCGACTCAAGGGGAGGAACAGCCACCCCAGCCCCCGCTGGACCCC
CAGAACCTGGCAAGACCGCCTGCCCCTGCCCAGACTGAGGCTCTTTCCCAACTGTTCTGCTCAGTGAGGA
CACTGACTGCCAAGGAGGAGCTTCTGCAGACCCTGCGGACCCACCTGATCCTCCACATGGCCCGAGCCCA
CGGCTACTCCAAGGTCATGACTGGGGACAGCTGCACACGCTTGGCTATCAAGCTCATGACCAACCTGGCG
CTGGGTCGAGGGGCCTTCCTGGCCTGGGATACGGGCTTCTCGGATGAGCGGCACGGGGACGTGGTGGTGG
TGCGGCCCATGCGGGACCACACCCTGAAGGAGGTCGCTTTCTACAACCGCCTGTTCTCCGTTCCTTCTGT
CTTCACACCAGCCGTCGACACCAAGGCCCCTGAAAAGGCCAGCATCCACCGGCTGATGGAGGCCTTCATC
CTCAGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTACAGGACAAGTGAGAAGCTGGTGAAGG
GCCCCCGGGATGGCCCTGCTGCTGGCGACTCCGGCCCCCGCTGCCTCCTCTGCATGTGTGCCCTGGACGT
CGACGCCGCTGACAGTGCCACGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCTCCCAGATGCAGTCACCC
ATCCCCCTGACTGAGACCCGGACACCCCCGGGGCCCTGCTGTTCTCCAGGGGTGGGCTGGGCCCAGCGCT
GTGGCCAGGGGGCCTGCAGGAGGGAGGACCCCCAAGCCTGCATTGAGGAGCAGCTGTGCTACAGCTGCCG
CGTGAACATGAAGGACTTGCCCTCACTGGACCCCCTGCCGCCGTACATCCTGGCTGAGGCCCAGCTCCGC
ACACAGAGGGCCTGGGGCTTGCAGGAGATCCGGGACTGTCTGATTGAGGACAGTGACGACGAGGCGGGCC
AGAGCTGA

Translation (515 aa):
MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIF
PGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQAT
GFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDSFLQQQHVLGAGGGPGPTQGEEQPPQPPLDP
QNLARPPAPAQTEALSQLFCSVRTLTAKEELLQTLRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLA
LGRGAFLAWDTGFSDERHGDVVVVRPMRDHTLKEVAFYNRLFSVPSVFTPAVDTKAPEKASIHRLMEAFI
LRLQTQFPSTVSTVYRTSEKLVKGPRDGPAAGDSGPRCLLCMCALDVDAADSATAFGAQTSSRLSQMQSP
IPLTETRTPPGPCCSPGVGWAQRCGQGACRREDPQACIEEQLCYSCRVNMKDLPSLDPLPPYILAEAQLR
TQRAWGLQEIRDCLIEDSDDEAGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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