NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45504.1 Public Homo sapiens 16 CMTM1 24 110 108 CCDS HistoryNCBI Gene:113540Re-query CCDS DB by CCDS ID:45504.1Re-query CCDS DB by GeneID:113540See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328020.10 ENSP00000330061.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328020.10Link to Ensembl Protein Viewer:ENSP00000330061.6Re-query CCDS DB by Nucleotide ID:ENST00000328020Re-query CCDS DB by Protein ID:ENSP00000330061
Original member Current member NCBI NM_181268.3 NP_851785.2 Accepted alive Link to Nucleotide Sequence:NM_181268.3Link to Protein Sequence:NP_851785.2Re-query CCDS DB by Nucleotide ID:NM_181268Re-query CCDS DB by Protein ID:NP_851785Link to BLAST:NP_851785.2

Chromosomal Locations for CCDS 45504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66566514 66566945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66569936 66570094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66577104 66577202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66578847 66578852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGATCCTGAACACGCCAAACCTGAGTCATCCGAGGCACCTTCAGGGAACTTGAAACAACCGGAGACTG
CCGCAGCCCTGGCAAGTAGCGGCAGCGTAGTGAGTTCTGTACCCAAGGCACAGCGCAACATCTCAGCGAA
GACCGCACCCCGGAAGCACCCCGCAGTCTCAATTCGCAGTGCGCAGTCCGCAGCCGCCGCACGTCCCCAA
GGCAGTGAGGGCACCGCACCCTCAAGGAAAGCCACCACACGCCCACCCCCAAAGCCCACACTCCCACCCC
CCACGCCCTCTGCACACACTGAATCCAAACTCTTAAATGAGATGGCGATCAAAGAGCGCGTGGAGGGCCG
AGCCAAAGTCCCGTACAAATTCAGGGACAGCCTCAAACGTTTCTCCTTCTCGCCCACTGGAATGTTGAAG
ATCCTGAGACTGAGTCTTATCTTAGGAGCATTAGCTTGTTTCATCATCACCCAAGCCAATGAGTCATTTA
TAACAATCACAAGTCTGGAAATCTGCATTGTCGTTTTTTTTATTCTAATATATGTGCTAACCCTTCACCA
CTTGCTGACCTATTTACATTGGCCCTTACTTGATCTTACCAACAGTATCATTACAGCTGTGTTCCTTTCA
GTAGTTGCCATCTTGGCCATGCAAGAAAAGAAAAGAAGGCATTTACTCTATGTCGGGGGGCGGTAA

Translation (231 aa):
MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSVPKAQRNISAKTAPRKHPAVSIRSAQSAAAARPQ
GSEGTAPSRKATTRPPPKPTLPPPTPSAHTESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLK
ILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLS
VVAILAMQEKKRRHLLYVGGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH