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Report for CCDS45396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45396.1 Public Homo sapiens 16 NAA60 24 110 108 CCDS HistoryNCBI Gene:79903Re-query CCDS DB by CCDS ID:45396.1Re-query CCDS DB by GeneID:79903See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 45396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407558.9 ENSP00000385903.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407558.9Link to Ensembl Protein Viewer:ENSP00000385903.4Re-query CCDS DB by Nucleotide ID:ENST00000407558Re-query CCDS DB by Protein ID:ENSP00000385903
Original member Current member EBI ENST00000414063.6 ENSP00000393224.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414063.6Link to Ensembl Protein Viewer:ENSP00000393224.2Re-query CCDS DB by Nucleotide ID:ENST00000414063Re-query CCDS DB by Protein ID:ENSP00000393224
Original member Current member EBI ENST00000575076.5 ENSP00000458667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575076.5Link to Ensembl Protein Viewer:ENSP00000458667.1Re-query CCDS DB by Nucleotide ID:ENST00000575076Re-query CCDS DB by Protein ID:ENSP00000458667
Original member Current member EBI ENST00000572169.6 ENSP00000458928.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572169.6Link to Ensembl Protein Viewer:ENSP00000458928.2Re-query CCDS DB by Nucleotide ID:ENST00000572169Re-query CCDS DB by Protein ID:ENSP00000458928
Original member Current member EBI ENST00000572584.2 ENSP00000459057.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572584.2Link to Ensembl Protein Viewer:ENSP00000459057.1Re-query CCDS DB by Nucleotide ID:ENST00000572584Re-query CCDS DB by Protein ID:ENSP00000459057
Original member Current member EBI ENST00000649360.1 ENSP00000497411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649360.1Link to Ensembl Protein Viewer:ENSP00000497411.1Re-query CCDS DB by Nucleotide ID:ENST00000649360Re-query CCDS DB by Protein ID:ENSP00000497411
Original member Current member EBI ENST00000649205.1 ENSP00000497988.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649205.1Link to Ensembl Protein Viewer:ENSP00000497988.1Re-query CCDS DB by Nucleotide ID:ENST00000649205Re-query CCDS DB by Protein ID:ENSP00000497988
Original member Current member NCBI NM_001083600.3 NP_001077069.1 Accepted alive Link to Nucleotide Sequence:NM_001083600.3Link to Protein Sequence:NP_001077069.1Re-query CCDS DB by Nucleotide ID:NM_001083600Re-query CCDS DB by Protein ID:NP_001077069Link to BLAST:NP_001077069.1
Original member Current member NCBI NM_001083601.3 NP_001077070.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083601.3Link to Protein Sequence:NP_001077070.1Re-query CCDS DB by Nucleotide ID:NM_001083601Re-query CCDS DB by Protein ID:NP_001077070Link to BLAST:NP_001077070.1
Original member Current member NCBI NM_024845.4 NP_079121.1 Accepted alive Link to Nucleotide Sequence:NM_024845.4Link to Protein Sequence:NP_079121.1Re-query CCDS DB by Nucleotide ID:NM_024845Re-query CCDS DB by Protein ID:NP_079121Link to BLAST:NP_079121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077069.1 242 Q9H7X0-1 242 100% 0 0
NP_001077070.1 242 Q9H7X0-1 242 100% 0 0
NP_079121.1 242 Q9H7X0-1 242 100% 0 0

Chromosomal Locations for CCDS 45396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3476228 3476337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3479471 3479600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3482502 3482598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3483363 3483597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3484699 3484855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGACAGAGGTGGTGCCATCCAGCGCGCTCAGCGAGGTCAGCCTGCGCCTCCTCTGCCACGATGACATAG
ACACTGTGAAGCACCTGTGTGGCGACTGGTTCCCCATCGAGTACCCAGACTCATGGTATCGTGATATCAC
ATCCAACAAGAAGTTCTTTTCCCTTGCTGCAACCTACAGAGGTGCCATTGTGGGAATGATAGTAGCTGAA
ATTAAGAACAGGACCAAAATACATAAAGAGGATGGAGATATTCTAGCATCCAACTTCTCTGTTGACACAC
AAGTCGCGTACATCCTAAGTCTGGGCGTCGTGAAAGAGTTCAGGAAGCACGGCATAGGTTCCCTCTTACT
TGAAAGTTTAAAGGATCACATATCAACCACCGCCCAGGACCACTGCAAAGCCATTTACCTGCATGTCCTC
ACCACCAACAACACAGCAATAAACTTCTATGAAAACAGAGACTTCAAGCAGCACCACTATCTCCCCTATT
ACTACTCCATTCGAGGGGTCCTCAAAGATGGCTTCACCTATGTCCTCTACATCAACGGCGGCCACCCTCC
CTGGACGATTTTGGACTACATCCAGCACCTGGGCTCTGCACTAGCCAGCCTGAGCCCCTGCTCCATTCCG
CACAGAGTCTACCGCCAGGCCCACAGCCTGCTCTGCAGCTTCCTGCCATGGTCGGGCATCTCTTCCAAGA
GTGGCATCGAGTACAGCCGGACCATGTGA

Translation (242 aa):
MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWYRDITSNKKFFSLAATYRGAIVGMIVAE
IKNRTKIHKEDGDILASNFSVDTQVAYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAIYLHVL
TTNNTAINFYENRDFKQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILDYIQHLGSALASLSPCSIP
HRVYRQAHSLLCSFLPWSGISSKSGIEYSRTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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