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Report for CCDS44897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44897.1 Public Homo sapiens 12 SP7 24 110 108 CCDS HistoryNCBI Gene:121340Re-query CCDS DB by CCDS ID:44897.1Re-query CCDS DB by GeneID:121340See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303846.3 ENSP00000302812.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303846.3Link to Ensembl Protein Viewer:ENSP00000302812.3Re-query CCDS DB by Nucleotide ID:ENST00000303846Re-query CCDS DB by Protein ID:ENSP00000302812
Original member Current member EBI ENST00000536324.4 ENSP00000443827.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536324.4Link to Ensembl Protein Viewer:ENSP00000443827.2Re-query CCDS DB by Nucleotide ID:ENST00000536324Re-query CCDS DB by Protein ID:ENSP00000443827
Original member Current member NCBI NM_001173467.3 NP_001166938.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001173467.3Link to Protein Sequence:NP_001166938.1Re-query CCDS DB by Nucleotide ID:NM_001173467Re-query CCDS DB by Protein ID:NP_001166938Link to BLAST:NP_001166938.1
Original member Current member NCBI NM_152860.2 NP_690599.1 Accepted alive Link to Nucleotide Sequence:NM_152860.2Link to Protein Sequence:NP_690599.1Re-query CCDS DB by Nucleotide ID:NM_152860Re-query CCDS DB by Protein ID:NP_690599Link to BLAST:NP_690599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166938.1 431 Q8TDD2-1 431 100% 0 0
NP_690599.1 431 Q8TDD2-1 431 100% 0 0

Chromosomal Locations for CCDS 44897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53328146 53329420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53335626 53335646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGCGTCCTCCCTGCTTGAGGAGGAAGTTCACTATGGCTCCAGTCCCCTGGCCATGCTGACGGCAGCGT
GCAGCAAATTTGGTGGCTCTAGCCCTCTGCGGGACTCAACAACTCTGGGCAAAGCAGGCACAAAGAAGCC
GTACTCTGTGGGCAGTGACCTTTCAGCCTCCAAAACCATGGGGGATGCTTATCCAGCCCCCTTTACAAGC
ACTAATGGGCTCCTTTCACCTGCAGGCAGTCCTCCAGCACCCACCTCAGGCTATGCTAATGATTACCCTC
CCTTTTCCCACTCATTCCCTGGGCCCACAGGCACCCAGGACCCTGGGCTACTAGTGCCCAAGGGGCACAG
CTCTTCTGACTGTCTGCCCAGTGTCTACACCTCTCTGGACATGACACACCCCTATGGCTCCTGGTACAAG
GCAGGCATCCATGCAGGCATTTCACCAGGCCCAGGCAACACTCCTACTCCATGGTGGGATATGCACCCTG
GAGGCAACTGGCTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGCCCACAGGTCCAGC
TCAGCCTCCACTGAACCCCCAGCTGCCCACCTACCCATCTGACTTTGCTCCCCTTAATCCAGCCCCCTAC
CCAGCTCCCCACCTCTTGCAACCAGGGCCCCAGCATGTCTTGCCCCAAGATGTCTATAAACCCAAGGCAG
TGGGAAATAGTGGGCAGCTAGAAGGGAGTGGTGGAGCCAAACCCCCACGGGGTGCAAGCACTGGGGGTAG
TGGTGGATATGGGGGCAGTGGGGCAGGGCGCTCCTCCTGCGACTGCCCTAATTGCCAGGAGCTAGAGCGG
CTGGGAGCAGCAGCGGCTGGGCTGCGGAAGAAGCCCATCCACAGCTGCCACATCCCTGGCTGCGGCAAGG
TGTATGGCAAGGCTTCGCACCTGAAGGCCCACTTGCGCTGGCACACAGGCGAGAGGCCCTTCGTCTGCAA
CTGGCTCTTCTGCGGCAAGAGGTTCACTCGTTCGGATGAGCTGGAGCGTCATGTGCGCACTCACACCCGG
GAGAAGAAGTTCACCTGCCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACCTGAGCAAACACCAGC
GCACCCATGGAGAACCAGGCCCGGGTCCCCCTCCCAGTGGCCCCAAGGAGCTGGGGGAGGGCCGCAGCAC
GGGGGAAGAGGAGGCCAGTCAGACGCCCCGACCTTCTGCCTCGCCAGCAACCCCAGAGAAAGCCCCTGGA
GGCAGCCCTGAGCAGAGCAACTTGCTGGAGATCTGA

Translation (431 aa):
MASSLLEEEVHYGSSPLAMLTAACSKFGGSSPLRDSTTLGKAGTKKPYSVGSDLSASKTMGDAYPAPFTS
TNGLLSPAGSPPAPTSGYANDYPPFSHSFPGPTGTQDPGLLVPKGHSSSDCLPSVYTSLDMTHPYGSWYK
AGIHAGISPGPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLPTGPAQPPLNPQLPTYPSDFAPLNPAPY
PAPHLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGGAKPPRGASTGGSGGYGGSGAGRSSCDCPNCQELER
LGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTR
EKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSGPKELGEGRSTGEEEASQTPRPSASPATPEKAPG
GSPEQSNLLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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