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Report for CCDS4399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4399.1 Public Homo sapiens 5 KIAA1191 24 110 108 CCDS HistoryNCBI Gene:57179Re-query CCDS DB by CCDS ID:4399.1Re-query CCDS DB by GeneID:57179See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298569.9 ENSP00000298569.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298569.9Link to Ensembl Protein Viewer:ENSP00000298569.4Re-query CCDS DB by Nucleotide ID:ENST00000298569Re-query CCDS DB by Protein ID:ENSP00000298569
Original member Current member EBI ENST00000510164.5 ENSP00000421061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510164.5Link to Ensembl Protein Viewer:ENSP00000421061.1Re-query CCDS DB by Nucleotide ID:ENST00000510164Re-query CCDS DB by Protein ID:ENSP00000421061
Original member Current member NCBI NM_001079685.3 NP_001073153.1 Accepted alive Link to Nucleotide Sequence:NM_001079685.3Link to Protein Sequence:NP_001073153.1Re-query CCDS DB by Nucleotide ID:NM_001079685Re-query CCDS DB by Protein ID:NP_001073153Link to BLAST:NP_001073153.1
Original member Current member NCBI NM_020444.5 NP_065177.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020444.5Link to Protein Sequence:NP_065177.2Re-query CCDS DB by Nucleotide ID:NM_020444Re-query CCDS DB by Protein ID:NP_065177Link to BLAST:NP_065177.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073153.1 305 Q96A73-1 305 100% 0 0
NP_065177.2 305 Q96A73-1 305 100% 0 0

Chromosomal Locations for CCDS 4399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176347600 176347808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176347921 176348063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176348250 176348356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176350613 176350737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176352622 176352748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176355571 176355749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176359481 176359508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCTTCAAGACAACCAGAAGTGCCTGCTCTTGAGGCTAGTGCGCCTCTAGGCAAGATGTCCCTGCCCA
TCGGGATATACCGCCGGGCAGTCAGCTATGATGATACCCTCGAGGACCCTGCGCCCATGACTCCTCCTCC
ATCGGACATGGGCAGCGTCCCTTGGAAGCCAGTGATTCCAGAGCGCAAGTATCAGCACCTCGCCAAGGTG
GAGGAAGGAGAGGCCAGTCTACCCTCCCCTGCCATGACCCTGTCATCAGCCATTGACAGTGTGGACAAGG
TCCCAGTGGTGAAGGCTAAAGCTACCCATGTCATCATGAATTCTCTGATCACAAAACAGACCCAGGAAAG
CATTCAGCATTTTGAGCGACAGGCAGGGCTGAGAGATGCTGGCTACACACCCCACAAGGGCCTCACCACC
GAGGAGACCAAGTACCTTCGAGTGGCCGAAGCACTCCACAAACTAAAGTTACAGAGTGGAGAGGTAACAA
AAGAAGAGAGGCAGCCTGCATCAGCCCAGTCCACCCCAAGCACCACTCCGCACTCTTCACCTAAGCAGAG
GCCCAGGGGCTGGTTCACTTCTGGTTCTTCCACAGCCTTACCTGGCCCAAATCCTAGCACCATGGACTCT
GGAAGTGGGGATAAGGACAGAAACTTGTCAGATAAGTGGAGCCTCTTTGGACCGAGATCCCTTCAGAAGT
ACGATTCTGGAAGTTTTGCCACCCAGGCCTACCGAGGAGCCCAGAAGCCCTCTCCATTGGAACTGATACG
TGCCCAGGCCAACCGAATGGCTGAAGATCCAGCAGCCTTGAAGCCCCCCAAGATGGACATCCCAGTGATG
GAAGGAAAGAAACAGCCACCACGGGCCCATAACCTCAAACCCCGTGACCTGAATGTGCTCACACCCACTG
GCTTCTAG

Translation (305 aa):
MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKV
EEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLTT
EETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS
GSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVM
EGKKQPPRAHNLKPRDLNVLTPTGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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