NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4398.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4398.2 Public Homo sapiens 5 SIMC1 24 110 108 CCDS HistoryNCBI Gene:375484Re-query CCDS DB by CCDS ID:4398.2Re-query CCDS DB by GeneID:375484See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 4398.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update is based on the coding sequence of BC066980.1, which lacks an exon in the 5' coding region. A longer variant containing this exon, as represented in SwissProt Q8NDZ2.1, may also be possible, but this has no full-length transcript support to enable current CCDS representation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4398.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341199.10 ENSP00000342075.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341199.10Link to Ensembl Protein Viewer:ENSP00000342075.6Re-query CCDS DB by Nucleotide ID:ENST00000341199Re-query CCDS DB by Protein ID:ENSP00000342075
Original member Current member EBI ENST00000430704.6 ENSP00000409287.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430704.6Link to Ensembl Protein Viewer:ENSP00000409287.2Re-query CCDS DB by Nucleotide ID:ENST00000430704Re-query CCDS DB by Protein ID:ENSP00000409287
Original member Current member NCBI NM_198567.6 NP_940969.3 Accepted alive Link to Nucleotide Sequence:NM_198567.6Link to Protein Sequence:NP_940969.3Re-query CCDS DB by Nucleotide ID:NM_198567Re-query CCDS DB by Protein ID:NP_940969Link to BLAST:NP_940969.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940969.3 457 Q8NDZ2-3 457 100% 0 0

Chromosomal Locations for CCDS 4398.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176238509 176238637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176295030 176295262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176296251 176296320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176313691 176313845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176322273 176322425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176324629 176324757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176336720 176336876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176337062 176337146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176345183 176345445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGT
CGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTGAACAAGGGTCA
AAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTAACAAATACCATTGAAGAGAATTTTCCTCTG
GGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAAGAGAAATCGTGGCTCACA
TCATCCAGAAAATCTTGCTCAGTGGCTCTGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCAT
GAAAATTCAACAGCTACATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTC
ATGGAGGAAGAGGGACAAACTCTGCCTGGGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACCCTAGAAG
ATGACTTTCAGCAGACCCTGAGGAGGCAACGGCAGCACCTGCAGCAATCCATTGCAAACATGGTGCTTTC
CTGTGACAAGCAGCCCCACAATGTCAGGGATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATGGA
TTGACTCAGCCCCCAAATGGAAATCAAACGTCTTCAGGAACAGGAATCTTGAAAGCCAGCAGTAGCCACC
CTTCTTCCCAGCCCAACCTGACAAAGAACACCAATCAGCTGATTGTGTGCCAGCTTCAGAGGATGCTCTC
CATAGCCGTAGAGGTGGACAGGACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTT
GTGCTGGACATTCCTGAGAGGAGCCAGAGAGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCT
GCAAAGTGTTAGAAATCATATTCCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCA
GGCCCTCTACTTTCTGAATAATTCTACGTCACTGCTCAAGTGTCAGTCAGATAAAAGCCAGTGGCAGACT
TGGGACGAATTGGTTGAGCATCTGCAGTTTCTGCTGTCCAGTTATCAACATGTTTTAAGAGAACACTTAA
GGAGTTCCGTGATCGACCGAAAGGACTTAATAATCAAAAGGATTAAGCCCAAACCCCAGCAAGGAGATGA
CATCACAGTGGTAGACGTAGAGAAGCAGATTGAGGCCTTCCGCAGCCGCCTGATCCAGATGCTGGGGGAG
CCTCTTGTCCCCCAACTCCAAGACAAAGTGCACTTGTTGAAGCTCCTGCTCTTCTATGCTGCGGACTTGA
ACCCTGATGCAGAGCCCTTTCAAAAGGGCTGGAGCGGCTCCTGA

Translation (457 aa):
MEDFIVISDDSGSESSGGARPGRSRRPRRALSRTSGALPRRTVNKGQKLEPIPHRRLRMVTNTIEENFPL
GTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYV
MEEEGQTLPGRVLFLRYVVQTLEDDFQQTLRRQRQHLQQSIANMVLSCDKQPHNVRDVIKWLVKAVTEDG
LTQPPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGF
VLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQT
WDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLIQMLGE
PLVPQLQDKVHLLKLLLFYAADLNPDAEPFQKGWSGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH