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Report for CCDS43793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43793.1 Public Homo sapiens 9 IFT74 24 110 108 CCDS HistoryNCBI Gene:80173Re-query CCDS DB by CCDS ID:43793.1Re-query CCDS DB by GeneID:80173See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380062.10 ENSP00000369402.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380062.10Link to Ensembl Protein Viewer:ENSP00000369402.5Re-query CCDS DB by Nucleotide ID:ENST00000380062Re-query CCDS DB by Protein ID:ENSP00000369402
Original member Current member EBI ENST00000433700.5 ENSP00000389224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433700.5Link to Ensembl Protein Viewer:ENSP00000389224.1Re-query CCDS DB by Nucleotide ID:ENST00000433700Re-query CCDS DB by Protein ID:ENSP00000389224
Original member Current member EBI ENST00000443698.5 ENSP00000404122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443698.5Link to Ensembl Protein Viewer:ENSP00000404122.1Re-query CCDS DB by Nucleotide ID:ENST00000443698Re-query CCDS DB by Protein ID:ENSP00000404122
Original member Current member NCBI NM_001099222.3 NP_001092692.1 Accepted alive Link to Nucleotide Sequence:NM_001099222.3Link to Protein Sequence:NP_001092692.1Re-query CCDS DB by Nucleotide ID:NM_001099222Re-query CCDS DB by Protein ID:NP_001092692Link to BLAST:NP_001092692.1
Original member Current member NCBI NM_001099223.3 NP_001092693.1 Accepted alive Link to Nucleotide Sequence:NM_001099223.3Link to Protein Sequence:NP_001092693.1Re-query CCDS DB by Nucleotide ID:NM_001099223Re-query CCDS DB by Protein ID:NP_001092693Link to BLAST:NP_001092693.1
Original member Current member NCBI NM_025103.4 NP_079379.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025103.4Link to Protein Sequence:NP_079379.2Re-query CCDS DB by Nucleotide ID:NM_025103Re-query CCDS DB by Protein ID:NP_079379Link to BLAST:NP_079379.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092692.1 600 Q96LB3-1 600 100% 0 0
NP_001092693.1 600 Q96LB3-1 600 100% 0 0
NP_079379.2 600 Q96LB3-1 600 100% 0 0

Chromosomal Locations for CCDS 43793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26961968 26962087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26978128 26978263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26980571 26980619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26984257 26984355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26984499 26984559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26988669 26988728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26990134 26990195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27009020 27009158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27011906 27011968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27016907 27017050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27018647 27018687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27029025 27029104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27044742 27044795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27047274 27047371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27048148 27048274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27055609 27055772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27056334 27056459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27060591 27060651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27062618 27062736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGCCAGCAATCACAAATCTTCAGCAGCTCGCCCTGTTTCAAGAGGTGGAGTTGGGTTAACAGGAAGGC
CTCCTTCTGGGATACGACCCCTATCAGGAAATATTCGAGTGGCAACTGCAATGCCACCTGGGACAGCAAG
ACCAGGTTCTCGTGGTTGTCCCATAGGGACTGGTGGAGTTCTGTCTTCTCAAATCAAAGTTGCCCATCGC
CCTGTAACACAACAAGGTTTGACTGGAATGAAAACTGGGACGAAAGGTCCCCAGAGGCAAATTTTAGACA
AATCTTACTATCTTGGGCTTCTTAGAAGTAAAATAAGTGAACTTACAACTGAAGTTAATAAACTTCAGAA
GGGAATAGAAATGTACAATCAAGAGAATTCAGTATATTTGTCATATGAAAAGAGGGCTGAGACTTTAGCT
GTTGAGATAAAAGAGCTTCAAGGACAACTAGCAGACTACAACATGTTGGTAGATAAACTTAATACCAACA
CTGAAATGGAAGAAGTAATGAATGATTACAATATGCTTAAAGCTCAAAATGATCGAGAAACACAAAGTTT
GGATGTCATATTTACTGAAAGACAAGCGAAAGAAAAACAAATCAGAAGTGTCGAAGAAGAAATTGAACAG
GAAAAACAAGCAACAGATGACATTATCAAAAATATGTCTTTTGAAAACCAAGTCAAGTACCTAGAGATGA
AAACCACAAATGAGAAACTGTTACAGGAATTAGATACACTTCAACAACAATTGGATTCACAGAACATGAA
AAAAGAGAGCCTGGAAGCAGAAATAGCTCACTCCCAGGTGAAACAGGAGGCGGTATTGCTGCATGAAAAA
CTTTATGAGTTGGAGTCCCATCGAGATCAAATGATTGCAGAAGACAAAAGCATAGGATCTCCAATGGAAG
AGAGAGAGAAATTACTTAAGCAGATTAAAGATGATAATCAGGAAATAGCCAGCATGGAAAGACAGTTAAC
AGATACAAAAGAAAAGATAAATCAGTTTATTGAAGAAATTAGACAACTTGACATGGATTTAGAGGAACAC
CAAGGTGAAATGAACCAGAAATACAAGGAGCTAAAGAAAAGGGAGGAACATATGGACACTTTTATTGAGA
CTTTTGAGGAAACAAAGAATCAGGAACTGAAACGAAAGGCACAGATAGAAGCCAACATTGTTGCACTCTT
GGAGCACTGCAGTCGAAATATAAATCGTATAGAACAGATATCCTCTATCACCAATCAAGAGCTAAAGATG
ATGCAGGATGACCTCAATTTTAAATCTACTGAAGTGCAGAAATCACAAAGTACAGCTCAGAATTTGACTT
CAGACATTCAACGTCTGCAGTTGGATCTGCAGAAAATGGAGCTTCTAGAAAGTAAGATGACTGAAGAACA
GCATTCTCTAAAAAGCAAAATTAAGCAAATGACAACTGATCTGGAGATATATAATGATTTGCCAGCTTTA
AAATCATCAGGTGAAGAAAAGATAAAGAAATTACATCAGGAGAGAATGATATTATCAACCCACAGAAATG
CCTTTAAGAAAATAATGGAGAAGCAAAACATAGAGTATGAGGCACTAAAAACACAATTGCAAGAAAATGA
GACACATTCTCAGCTTACAAATTTGGAGAGAAAGTGGCAACACCTTGAGCAAAATAATTTTGCGATGAAA
GAATTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCAATTAAGAAAAATGTGACCAAGCAGATTG
CAGAGTACAATAAAACCATCGTGGATGCTTTACATAGCACCAGCGGAAACTGA

Translation (600 aa):
MASNHKSSAARPVSRGGVGLTGRPPSGIRPLSGNIRVATAMPPGTARPGSRGCPIGTGGVLSSQIKVAHR
PVTQQGLTGMKTGTKGPQRQILDKSYYLGLLRSKISELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLA
VEIKELQGQLADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQ
EKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEK
LYELESHRDQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEH
QGEMNQKYKELKKREEHMDTFIETFEETKNQELKRKAQIEANIVALLEHCSRNINRIEQISSITNQELKM
MQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKSKIKQMTTDLEIYNDLPAL
KSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNFAMK
EFIATKSQESDYQPIKKNVTKQIAEYNKTIVDALHSTSGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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