NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4373.1 Public Homo sapiens 5 KCNMB1 24 110 108 CCDS HistoryNCBI Gene:3779Re-query CCDS DB by CCDS ID:4373.1Re-query CCDS DB by GeneID:3779See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274629.9 ENSP00000274629.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274629.9Link to Ensembl Protein Viewer:ENSP00000274629.3Re-query CCDS DB by Nucleotide ID:ENST00000274629Re-query CCDS DB by Protein ID:ENSP00000274629
Original member Current member NCBI NM_004137.4 NP_004128.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004137.4Link to Protein Sequence:NP_004128.1Re-query CCDS DB by Nucleotide ID:NM_004137Re-query CCDS DB by Protein ID:NP_004128Link to BLAST:NP_004128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004128.1 191 Q16558-1 191 100% 0 0

Chromosomal Locations for CCDS 4373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 170378704 170378973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 170383679 170383850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 170385314 170385447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGTGAAGAAGCTGGTGATGGCCCAGAAGCGGGGAGAGACACGAGCCCTTTGCCTGGGTGTAACCATGG
TGGTGTGTGCCGTCATCACCTACTACATCCTGGTCACGACTGTGCTGCCCCTCTACCAGAAAAGCGTGTG
GACCCAGGAATCCAAGTGCCACCTGATTGAGACCAACATCAGGGACCAGGAGGAGCTGAAGGGCAAGAAG
GTGCCCCAGTACCCATGCCTGTGGGTCAACGTGTCAGCTGCCGGCAGGTGGGCTGTGCTGTACCACACGG
AGGACACTCGGGACCAGAACCAGCAGTGCTCCTACATCCCAGGCAGCGTGGACAATTACCAGACGGCCCG
GGCCGACGTGGAGAAGGTCAGAGCCAAATTCCAAGAGCAGCAGGTCTTCTACTGCTTCTCCGCACCTCGG
GGGAACGAAACCAGCGTCCTATTCCAGCGCCTCTACGGGCCCCAGGCCCTCCTCTTCTCCCTCTTCTGGC
CCACCTTCCTGCTGACCGGTGGCCTCCTCATTATCGCCATGGTGAAGAGCAACCAGTACCTGTCCATCCT
GGCGGCCCAGAAGTAG

Translation (191 aa):
MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNIRDQEELKGKK
VPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQVFYCFSAPR
GNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH