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Report for CCDS41661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41661.1 Public Homo sapiens 11 SLC22A10 24 110 108 CCDS HistoryNCBI Gene:387775Re-query CCDS DB by CCDS ID:41661.1Re-query CCDS DB by GeneID:387775See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332793.11 ENSP00000327569.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332793.11Link to Ensembl Protein Viewer:ENSP00000327569.6Re-query CCDS DB by Nucleotide ID:ENST00000332793Re-query CCDS DB by Protein ID:ENSP00000327569
Original member Current member NCBI NM_001039752.4 NP_001034841.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039752.4Link to Protein Sequence:NP_001034841.3Re-query CCDS DB by Nucleotide ID:NM_001039752Re-query CCDS DB by Protein ID:NP_001034841Link to BLAST:NP_001034841.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034841.3 541 Q63ZE4-1 541 100% 0 0

Chromosomal Locations for CCDS 41661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63290166 63290567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63291540 63291643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63297303 63297457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63297559 63297727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63298920 63299043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63299514 63299629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63302329 63302543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63304108 63304216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63304686 63304889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63311007 63311034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCCTTTGAGGAGCTCTTGAGTCAAGTTGGAGGCCTTGGGAGATTTCAGATGCTTCATCTGGTTTTTA
TTCTTCCCTCTCTCATGTTATTAATCCCTCATATACTGCTAGAGAACTTTGCTGCAGCCATTCCTGGTCA
TCGTTGCTGGGTCCACATGCTGGACAATAATACTGGATCTGGTAATGAAACTGGAATCCTCAGTGAAGAT
GCCCTCTTGAGAATCTCTATCCCACTAGACTCAAATCTGAGGCCAGAGAAGTGTCGTCGCTTTGTCCATC
CCCAGTGGCAGCTTCTTCACCTGAATGGGACTATCCACAGCACAAGTGAGGCAGACACAGAACCCTGTGT
GGATGGCTGGGTATATGATCAAAGCTACTTCCCTTCGACCATTGTGACTAAGTGGGACCTGGTATGTGAT
TATCAGTCACTGAAATCAGTGGTTCAATTCCTACTTCTGACTGGAATGCTGGTGGGAGGCATCATAGGTG
GCCATGTCTCAGACAGGTTTGGGCGAAGATTTATTCTCAGATGGTGTTTGCTCCAGCTTGCCATTACTGA
CACCTGCGCTGCCTTCGCTCCCACCTTCCCTGTTTACTGTGTACTACGCTTCTTGGCAGGTTTTTCTTCC
ATGATCATTATATCAAATAATTCTTTGCCCATTACTGAGTGGATAAGGCCCAACTCTAAAGCCCTGGTAG
TAATATTGTCATCTGGTGCCCTTAGTATTGGACAGATAATCCTGGGAGGCTTGGCTTATGTCTTCCGAGA
CTGGCAAACCCTGCACGTGGTGGCGTCTGTACCTTTCTTTGTCTTCTTTCTTCTTTCAAGGTGGCTGGTG
GAATCTGCTCGGTGGTTGATAATCACCAATAAACTAGATGAGGGCTTAAAGGCACTTAGAAAAGTTGCAC
GCACAAATGGAATAAAGAATGCTGAAGAAACCCTGAACATAGAGGTTGTAAGATCCACCATGCAGGAGGA
GCTGGATGCAGCACAGACCAAAACTACTGTGTGTGACTTGTTCCGCAACCCCAGTATGCGTAAAAGGATC
TGTATCCTGGTATTTTTGAGATTTGCAAACACAATACCTTTTTATGGTACCATGGTCAATCTTCAGCATG
TGGGGAGCAACATTTTCCTGTTGCAGGTACTTTATGGAGCTGTCGCTCTCATAGTTCGATGTCTTGCTCT
TTTGACACTAAATCATATGGGCCGTCGAATAAGCCAGATATTGTTCATGTTCCTGGTGGGCCTTTCCATT
TTGGCCAACACGTTTGTGCCCAAAGAAATGCAGACCCTGCGTGTGGCTTTGGCATGTCTGGGAATCGGCT
GTTCTGCTGCTACTTTTTCCAGTGTTGCTGTTCACTTCATTGAACTCATCCCCACTGTTCTCAGGGCAAG
AGCTTCAGGAATAGATTTAACGGCTAGTAGGATTGGAGCAGCACTGGCTCCCCTCTTGATGACCTTAACG
GTATTTTTTACCACTTTGCCATGGATCATTTATGGAATCTTCCCCATCATTGGTGGCCTTATTGTCTTCC
TCCTACCAGAAACCAAGAATCTGCCTTTGCCTGACACCATCAAGGATGTGGAAAATCAAAAAAAAAATCT
CAAGGAAAAGGCATAA

Translation (541 aa):
MAFEELLSQVGGLGRFQMLHLVFILPSLMLLIPHILLENFAAAIPGHRCWVHMLDNNTGSGNETGILSED
ALLRISIPLDSNLRPEKCRRFVHPQWQLLHLNGTIHSTSEADTEPCVDGWVYDQSYFPSTIVTKWDLVCD
YQSLKSVVQFLLLTGMLVGGIIGGHVSDRFGRRFILRWCLLQLAITDTCAAFAPTFPVYCVLRFLAGFSS
MIIISNNSLPITEWIRPNSKALVVILSSGALSIGQIILGGLAYVFRDWQTLHVVASVPFFVFFLLSRWLV
ESARWLIITNKLDEGLKALRKVARTNGIKNAEETLNIEVVRSTMQEELDAAQTKTTVCDLFRNPSMRKRI
CILVFLRFANTIPFYGTMVNLQHVGSNIFLLQVLYGAVALIVRCLALLTLNHMGRRISQILFMFLVGLSI
LANTFVPKEMQTLRVALACLGIGCSAATFSSVAVHFIELIPTVLRARASGIDLTASRIGAALAPLLMTLT
VFFTTLPWIIYGIFPIIGGLIVFLLPETKNLPLPDTIKDVENQKKNLKEKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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