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Report for CCDS41623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41623.1 Public Homo sapiens 11 NUCB2 24 110 108 CCDS HistoryNCBI Gene:4925Re-query CCDS DB by CCDS ID:41623.1Re-query CCDS DB by GeneID:4925See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529010.6 ENSP00000436455.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529010.6Link to Ensembl Protein Viewer:ENSP00000436455.1Re-query CCDS DB by Nucleotide ID:ENST00000529010Re-query CCDS DB by Protein ID:ENSP00000436455
Original member Current member NCBI NM_001352664.2 NP_001339593.1 Accepted alive Link to Nucleotide Sequence:NM_001352664.2Link to Protein Sequence:NP_001339593.1Re-query CCDS DB by Nucleotide ID:NM_001352664Re-query CCDS DB by Protein ID:NP_001339593Link to BLAST:NP_001339593.1
Original member Current member NCBI NM_001352668.2 NP_001339597.1 Accepted alive Link to Nucleotide Sequence:NM_001352668.2Link to Protein Sequence:NP_001339597.1Re-query CCDS DB by Nucleotide ID:NM_001352668Re-query CCDS DB by Protein ID:NP_001339597Link to BLAST:NP_001339597.1
Original member Current member NCBI NM_001352669.2 NP_001339598.1 Accepted alive Link to Nucleotide Sequence:NM_001352669.2Link to Protein Sequence:NP_001339598.1Re-query CCDS DB by Nucleotide ID:NM_001352669Re-query CCDS DB by Protein ID:NP_001339598Link to BLAST:NP_001339598.1
Original member Current member NCBI NM_001352670.2 NP_001339599.1 Accepted alive Link to Nucleotide Sequence:NM_001352670.2Link to Protein Sequence:NP_001339599.1Re-query CCDS DB by Nucleotide ID:NM_001352670Re-query CCDS DB by Protein ID:NP_001339599Link to BLAST:NP_001339599.1
Original member Current member NCBI NM_001352672.2 NP_001339601.1 Accepted alive Link to Nucleotide Sequence:NM_001352672.2Link to Protein Sequence:NP_001339601.1Re-query CCDS DB by Nucleotide ID:NM_001352672Re-query CCDS DB by Protein ID:NP_001339601Link to BLAST:NP_001339601.1
Original member Current member NCBI NM_005013.4 NP_005004.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005013.4Link to Protein Sequence:NP_005004.1Re-query CCDS DB by Nucleotide ID:NM_005013Re-query CCDS DB by Protein ID:NP_005004Link to BLAST:NP_005004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339593.1 420 P80303-1 420 100% 0 0
NP_001339597.1 420 P80303-1 420 100% 0 0
NP_001339598.1 420 P80303-1 420 100% 0 0
NP_001339599.1 420 P80303-1 420 100% 0 0
NP_001339601.1 420 P80303-1 420 100% 0 0
NP_005004.1 420 P80303-1 420 100% 0 0

Chromosomal Locations for CCDS 41623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17295324 17295467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17296104 17296211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17301744 17301870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17309572 17309675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17310825 17311010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17311193 17311283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17311872 17311930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17312028 17312120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17315386 17315475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17330127 17330297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17330902 17330983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17331412 17331419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAGGTGGAGGACCATCCTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTACTGCTCTTGAAG
CTGTGCCTATTGACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAAAGTGCGAAGATAGAACC
ACCAGATACTGGACTTTATTATGATGAATATCTCAAGCAAGTGATTGATGTGCTGGAAACAGATAAACAC
TTCAGAGAAAAGCTCCAGAAAGCAGACATAGAGGAAATAAAGAGTGGGAGGCTAAGCAAAGAACTGGATT
TAGTAAGTCACCATGTGAGGACAAAACTTGATGAACTGAAAAGGCAAGAAGTAGGAAGGTTAAGAATGTT
AATTAAAGCTAAGTTGGATTCCCTTCAAGATATAGGCATGGACCACCAAGCTCTTCTAAAACAATTTGAT
CACCTAAACCACCTGAATCCTGACAAGTTTGAATCCACAGATTTAGATATGCTAATCAAAGCGGCAACAA
GTGATCTGGAACACTATGACAAGACTCGTCATGAAGAATTTAAAAAATATGAAATGATGAAGGAACATGA
AAGGAGAGAATATTTAAAAACATTGAATGAAGAAAAGAGAAAAGAAGAAGAGTCTAAATTTGAAGAAATG
AAGAAAAAGCATGAAAATCACCCTAAAGTTAATCACCCAGGAAGCAAAGATCAACTAAAAGAGGTATGGG
AAGAGACTGATGGATTGGATCCTAATGACTTTGACCCCAAGACATTTTTCAAATTACATGATGTCAATAG
TGATGGATTCCTGGATGAACAAGAATTAGAAGCCCTATTTACTAAAGAGTTGGAGAAAGTATATGACCCT
AAAAATGAAGAGGATGATATGGTAGAAATGGAAGAAGAAAGGCTTAGAATGAGGGAACATGTAATGAATG
AGGTTGATACTAACAAAGACAGATTGGTGACTCTGGAGGAGTTTTTGAAAGCCACAGAAAAAAAAGAATT
CTTGGAGCCAGATAGCTGGGAGACATTAGATCAGCAACAGTTCTTCACAGAGGAAGAACTAAAAGAATAT
GAAAATATTATTGCTTTACAAGAAAATGAACTTAAGAAGAAGGCAGATGAGCTTCAGAAACAAAAAGAAG
AGCTACAACGTCAGCATGATCAACTGGAGGCTCAGAAGCTGGAATATCATCAGGTCATACAGCAGATGGA
ACAAAAAAAATTACAACAAGGAATTCCTCCATCAGGGCCAGCTGGAGAATTGAAGTTTGAGCCACACATT
TAA

Translation (420 aa):
MRWRTILLQYCFLLITCLLTALEAVPIDIDKTKVQNIHPVESAKIEPPDTGLYYDEYLKQVIDVLETDKH
FREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDELKRQEVGRLRMLIKAKLDSLQDIGMDHQALLKQFD
HLNHLNPDKFESTDLDMLIKAATSDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESKFEEM
KKKHENHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVYDP
KNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELKEY
ENIIALQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKLQQGIPPSGPAGELKFEPHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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