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Report for CCDS403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
403.1 Public Homo sapiens 1 COL8A2 24 110 108 CCDS HistoryNCBI Gene:1296Re-query CCDS DB by CCDS ID:403.1Re-query CCDS DB by GeneID:1296See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303143.9 ENSP00000305913.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303143.9Link to Ensembl Protein Viewer:ENSP00000305913.4Re-query CCDS DB by Nucleotide ID:ENST00000303143Re-query CCDS DB by Protein ID:ENSP00000305913
Original member Current member EBI ENST00000397799.2 ENSP00000380901.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397799.2Link to Ensembl Protein Viewer:ENSP00000380901.1Re-query CCDS DB by Nucleotide ID:ENST00000397799Re-query CCDS DB by Protein ID:ENSP00000380901
Original member Current member NCBI NM_005202.4 NP_005193.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005202.4Link to Protein Sequence:NP_005193.1Re-query CCDS DB by Nucleotide ID:NM_005202Re-query CCDS DB by Protein ID:NP_005193Link to BLAST:NP_005193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005193.1 703 P25067 703 100% 0 0

Chromosomal Locations for CCDS 403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36097569 36099487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36100050 36100242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGCTGGGGACTCTGACACCCCTGTCTTCGCTGCTGCTGCTGCTACTGGTGCTGGTGCTGGGGTGTGGGC
CG
CGGGCGTCCTCTGGTGGCGGGGCCGGTGGGGCGGCGGGCTATGCCCCAGTGAAGTACATCCAGCCCAT
G
CAGAAAGGACCTGTGGGACCGCCCTTCCGTGAGGGCAAAGGCCAGTACCTGGAAATGCCTCTACCGCTG
CTG
CCGATGGACCTGAAGGGAGAGCCCGGCCCCCCTGGGAAGCCCGGGCCTCGGGGTCCCCCTGGCCCCC
CT
GGCTTCCCAGGAAAACCAGGCATGGGAAAGCCAGGACTCCATGGGCAGCCTGGCCCTGCTGGGCCCCC
T
GGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAGGGCAGCCG
GGG
CTTCGGGGGGAGCCAGGAATACGAGGGGACCAGGGCCTCCGGGGACCCCCAGGACCCCCTGGCCTCC
CG
GGCCCCTCAGGCATTACTATCCCTGGAAAACCAGGTGCCCAAGGGGTGCCAGGGCCCCCAGGATTCCA
G
GGGGAACCAGGGCCCCAGGGGGAGCCTGGGCCCCCAGGTGATCGAGGCCTCAAGGGGGATAATGGAGTG
GGC
CAGCCCGGGCTGCCTGGGGCCCCAGGGCAGGGGGGTGCCCCCGGCCCCCCCGGCCTCCCTGGTCCAG
CT
GGCTTAGGCAAACCTGGTTTGGATGGGCTTCCTGGGGCCCCAGGAGACAAGGGTGAGTCTGGGCCTCC
T
GGAGTTCCAGGCCCCAGGGGGGAGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGAGTAGACGGTGTG
GGA
GTCCCAGGGGCAGCAGGGTTGCCAGGACCACAGGGCCCATCAGGGGCCAAAGGGGAGCCAGGGACCC
GG
GGCCCCCCTGGGCTGATAGGCCCCACTGGCTATGGGATGCCAGGACTGCCAGGCCCCAAGGGGGACAG
G
GGCCCAGCTGGGGTCCCAGGACTCTTGGGGGACAGGGGTGAGCCAGGGGAGGATGGGGAGCCAGGGGAG
CAG
GGCCCACAGGGTCTTGGGGGTCCCCCTGGACTTCCTGGGTCTGCAGGGCTTCCTGGCAGACGTGGGC
CC
CCTGGGCCTAAGGGTGAGGCAGGGCCTGGAGGACCCCCAGGAGTGCCTGGCATTCGAGGTGACCAGGG
G
CCTAGTGGCCTGGCTGGGAAACCAGGGGTCCCAGGTGAGAGGGGACTTCCTGGGGCCCATGGACCCCCT
GGA
CCAACTGGGCCCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAGGACCAGGGGTGGCAGGAGCCC
TG
GGGCAGAAAGGTGACTTGGGGCTCCCTGGGCAGCCTGGCCTGAGGGGTCCCTCAGGAATCCCAGGACT
C
CAGGGTCCAGCTGGCCCTATTGGGCCCCAAGGCCTGCCGGGCCTGAAGGGGGAACCAGGCCTGCCAGGG
CCC
CCTGGAGAGGGGAGAGCAGGGGAACCTGGCACGGCTGGGCCCACGGGGCCCCCAGGGGTCCCTGGCT
CC
CCTGGAATCACGGGCCCTCCGGGGCCTCCCGGGCCCCCGGGACCCCCTGGTGCCCCTGGGGCCTTCGA
T
GAGACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGGTGCCGTGCTGGGCAAGGGGGGC
AAG
CCACAGTTTGGGCTGGGCGAGCTGTCTGCCCATGCCACACCGGCCTTCACTGCGGTGCTCACCTCGC
CC
TTCCCCGCCTCGGGCATGCCCGTGAAATTTGACCGGACTCTCTACAATGGCCACAGCGGCTACAACCC
A
GCCACTGGCATCTTCACCTGCCCTGTGGGCGGCGTCTACTACTTTGCTTACCATGTGCACGTCAAGGGC
ACC
AACGTGTGGGTGGCCCTGTACAAGAACAACGTGCCGGCCACCTATACCTACGATGAGTACAAGAAGG
GC
TACCTGGACCAGGCATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGAT
G
CCGTCGGACCAGGCCAACGGCCTCTACTCCACGGAGTACATCCACTCCTCCTTTTCAGGATTCTTGCTC
TGC
CCCACATAA


Translation (703 aa):
MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPL
L
PMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQP
G
LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGV
G
QPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV
G
VPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGE
Q
GPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
G
PTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPG
P
PGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGG
K
PQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
T
NVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
C
PT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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