NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3867.1 Public Homo sapiens 5 IRX4 24 110 108 CCDS HistoryNCBI Gene:50805Re-query CCDS DB by CCDS ID:3867.1Re-query CCDS DB by GeneID:50805See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3867.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231357.7 ENSP00000231357.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231357.7Link to Ensembl Protein Viewer:ENSP00000231357.2Re-query CCDS DB by Nucleotide ID:ENST00000231357Re-query CCDS DB by Protein ID:ENSP00000231357
Original member Current member EBI ENST00000505790.5 ENSP00000423161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505790.5Link to Ensembl Protein Viewer:ENSP00000423161.1Re-query CCDS DB by Nucleotide ID:ENST00000505790Re-query CCDS DB by Protein ID:ENSP00000423161
Original member Current member EBI ENST00000513692.5 ENSP00000424235.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513692.5Link to Ensembl Protein Viewer:ENSP00000424235.1Re-query CCDS DB by Nucleotide ID:ENST00000513692Re-query CCDS DB by Protein ID:ENSP00000424235
Original member Current member NCBI NM_001278632.1 NP_001265561.1 Accepted alive Link to Nucleotide Sequence:NM_001278632.1Link to Protein Sequence:NP_001265561.1Re-query CCDS DB by Nucleotide ID:NM_001278632Re-query CCDS DB by Protein ID:NP_001265561Link to BLAST:NP_001265561.1
Original member Current member NCBI NM_001278634.2 NP_001265563.1 Accepted alive Link to Nucleotide Sequence:NM_001278634.2Link to Protein Sequence:NP_001265563.1Re-query CCDS DB by Nucleotide ID:NM_001278634Re-query CCDS DB by Protein ID:NP_001265563Link to BLAST:NP_001265563.1
Original member Current member NCBI NM_016358.3 NP_057442.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016358.3Link to Protein Sequence:NP_057442.1Re-query CCDS DB by Nucleotide ID:NM_016358Re-query CCDS DB by Protein ID:NP_057442Link to BLAST:NP_057442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265561.1 519 P78413-1 519 100% 0 0
NP_001265563.1 519 P78413-1 519 100% 0 0
NP_057442.1 519 P78413-1 519 100% 0 0

Chromosomal Locations for CCDS 3867.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 1877969 1878792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1879504 1879832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1880725 1880834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1881808 1882059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1882603 1882647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGTCCTACCCGCAGTTTGGATACCCCTACTCCTCGGCTCCCCAGTTCTTGATGGCCACCAACTCCCTGA
GCACGTGCTGCGAGTCCGGAGGCCGCACGCTGGCGGACTCCGGGCCCGCCGCCTCGGCCCAGGCGCCGGT
CTACTGCCCGGTCTACGAGAGCCGGCTGCTGGCCACCGCGCGCCACGAGCTCAACTCGGCCGCGGCGCTG
GGCGTCTATGGGGGTCCCTATGGCGGATCGCAGGGCTATGGCAACTACGTGACCTACGGCTCGGAGGCGT
CCGCCTTCTACTCGCTGAACAGCTTTGATTCCAAGGATGGTTCGGGATCTGCGCATGGGGGCCTGGCACC
AGCCGCTGCCGCCTACTACCCTTACGAGCCAGCTCTGGGCCAGTACCCCTATGACAGGTATGGAACCATG
GACAGCGGCACGCGGCGCAAGAACGCCACGCGCGAGACCACCAGCACGCTCAAGGCCTGGCTGCAGGAGC
ACCGCAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCAC
ACAGGTCTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACGTGGCCGCCG
CGGAACAAGTGCGCAGACGAGAAGCGGCCCTACGCGGAGGGCGAGGAGGAGGAGGGGGGCGAGGAGGAGG
CGCGGGAGGAGCCCCTCAAGAGCTCCAAGAACGCAGAGCCCGTGGGCAAAGAGGAGAAGGAGCTGGAGCT
TAGTGACTTGGACGACTTCGACCCGCTGGAAGCAGAGCCGCCGGCGTGCGAGCTGAAGCCGCCCTTCCAC
TCCCTGGACGGCGGTCTGGAGCGCGTCCCCGCCGCGCCCGACGGCCCGGTCAAGGAGGCCTCAGGCGCGC
TCCGGATGTCTCTGGCCGCGGGTGGCGGAGCTGCTCTGGACGAGGACCTGGAGAGGGCCCGGAGCTGTCT
CCGCAGCGCGGCGGCCGGGCCGGAGCCACTGCCGGGCGCAGAGGGCGGCCCTCAGGTCTGCGAGGCCAAG
CTGGGGTTTGTGCCGGCGGGGGCGTCGGCAGGCCTGGAGGCTAAGCCGCGCATCTGGTCCCTGGCCCACA
CAGCCACCGCCGCCGCCGCCGCCGCCACCTCCCTGAGCCAGACTGAGTTTCCGTCGTGCATGCTCAAGCG
CCAAGGTCCCGCGGCCCCTGCGGCTGTGTCCTCCGCGCCCGCCACGTCCCCGTCTGTGGCCCTTCCCCAC
TCTGGCGCCCTGGACAGGCACCAGGACTCCCCGGTAACCAGTCTCAGAAACTGGGTGGACGGGGTCTTCC
ACGACCCCATCCTCAGGCACAGCACTTTGAACCAGGCCTGGGCCACCGCCAAGGGCGCCCTCCTGGACCC
CGGGCCTCTGGGACGCTCGCTGGGGGCGGGCGCGAACGTGCTGACTGCACCCCTGGCCCGCGCCTTTCCG
CCTGCCGTGCCCCAGGACGCCCCAGCTGCAGGCGCCGCCAGGGAGCTGCTCGCCCTGCCCAAGGCCGGCG
GCAAACCCTTCTGCGCCTGA

Translation (519 aa):
MSYPQFGYPYSSAPQFLMATNSLSTCCESGGRTLADSGPAASAQAPVYCPVYESRLLATARHELNSAAAL
GVYGGPYGGSQGYGNYVTYGSEASAFYSLNSFDSKDGSGSAHGGLAPAAAAYYPYEPALGQYPYDRYGTM
DSGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWPP
RNKCADEKRPYAEGEEEEGGEEEAREEPLKSSKNAEPVGKEEKELELSDLDDFDPLEAEPPACELKPPFH
SLDGGLERVPAAPDGPVKEASGALRMSLAAGGGAALDEDLERARSCLRSAAAGPEPLPGAEGGPQVCEAK
LGFVPAGASAGLEAKPRIWSLAHTATAAAAAATSLSQTEFPSCMLKRQGPAAPAAVSSAPATSPSVALPH
SGALDRHQDSPVTSLRNWVDGVFHDPILRHSTLNQAWATAKGALLDPGPLGRSLGAGANVLTAPLARAFP
PAVPQDAPAAGAARELLALPKAGGKPFCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH