NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35417.1 Public Homo sapiens X MAGEC1 24 110 108 CCDS HistoryNCBI Gene:9947Re-query CCDS DB by CCDS ID:35417.1Re-query CCDS DB by GeneID:9947See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285879.5 ENSP00000285879.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285879.5Link to Ensembl Protein Viewer:ENSP00000285879.4Re-query CCDS DB by Nucleotide ID:ENST00000285879Re-query CCDS DB by Protein ID:ENSP00000285879
Original member Current member NCBI NM_005462.5 NP_005453.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005462.5Link to Protein Sequence:NP_005453.2Re-query CCDS DB by Nucleotide ID:NM_005462Re-query CCDS DB by Protein ID:NP_005453Link to BLAST:NP_005453.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005453.2 1142 O60732-1 1142 100% 0 0

Chromosomal Locations for CCDS 35417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 141905073 141905076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 141905409 141908833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGGGGGACAAGGATATGCCTACTGCTGGGATGCCGAGTCTTCTCCAGAGTTCCTCTGAGAGTCCTCAGA
GT
TGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTCCCCAGAGTTCTCCTGAGAGCGACGACAC
C
CTGTATCCTCTCCAGAGTCCTCAGAGTCGTTCTGAGGGGGAGGACTCCTCGGATCCTCTCCAGAGACCT
CCT
GAGGGGAAGGACTCCCAGTCTCCTCTCCAGATTCCCCAGAGTTCTCCTGAGGGCGACGACACCCAGT
CT
CCTCTCCAGAATTCTCAGAGTTCTCCTGAGGGGAAGGACTCCCTGTCTCCTCTAGAGATTTCTCAGAG
C
CCTCCTGAGGGTGAGGATGTCCAGTCTCCTCTGCAGAATCCTGCGAGTTCCTTCTTCTCCTCTGCTTTA
TTG
AGTATTTTCCAGAGTTCCCCTGAGAGTACTCAAAGTCCTTTTGAGGGTTTTCCCCAGTCTGTTCTCC
AG
ATTCCTGTGAGCGCCGCCTCCTCCTCCACTTTAGTGAGTATTTTCCAGAGTTCCCCTGAGAGTACTCA
A
AGTCCTTTTGAGGGTTTTCCCCAGTCTCCACTCCAGATTCCTGTGAGCCGCTCCTTCTCCTCCACTTTA
TTG
AGTATTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTGCCCAGTCTCCTCTCC
AG
ATTCCTGTGAGCCCCTCCTCCTCCTCCACTTTACTGAGTCTTTTCCAGAGTTTCTCTGAGAGAACTCA
G
AGTACTTTTGAGGGTTTTGCCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTA
GTG
AGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AG
ATTCCTGTGAGCTCCTCCTCCTCCTCCACTTTATTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
C
AGTACTTTTGAGGGTTTTCCCCAGTCTCTTCTCCAGATTCCTATGACCTCCTCCTTCTCCTCTACTTTA
TTG
AGTATTTTCCAGAGTTCTCCTGAGAGTGCTCAAAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AG
ATTCCTGGGAGCCCCTCCTTCTCCTCCACTTTACTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
C
AGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCCAGATTCCTATGACCTCCTCCTTCTCCTCTACTTTA
TTG
AGTATTTTACAGAGTTCTCCTGAGAGTGCTCAAAGTGCTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AG
ATTCCTGTGAGCTCCTCTTTCTCCTACACTTTATTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
C
AGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCCAGATTCCTGTGAGCTCCTCCTCCTCCTCCTCCACT
TTA
TTGAGTCTTTTCCAGAGTTCCCCTGAGTGTACTCAAAGTACTTTTGAGGGTTTTCCCCAGTCTCCTC
TC
CAGATTCCTCAGAGTCCTCCTGAAGGGGAGAATACCCATTCTCCTCTCCAGATTGTTCCAAGTCTTCC
T
GAGTGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTATCT
CCT
CACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCC
CT
CAGGGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCATGTC
T
CCTCTCTACTTTCCTCAGAGTCCTCTTCAGGGGGAGGAATTCCAGTCTTCTCTCCAGAGCCCTGTGAGC
ATC
TGCTCCTCCTCCACTCCATCCAGTCTTCCCCAGAGTTTCCCTGAGAGTTCTCAGAGTCCTCCTGAGG
GG
CCTGTCCAGTCTCCTCTCCATAGTCCTCAGAGCCCTCCTGAGGGGATGCACTCCCAATCTCCTCTCCA
G
AGTCCTGAGAGTGCTCCTGAGGGGGAGGATTCCCTGTCTCCTCTCCAAATTCCTCAGAGTCCTCTTGAG
GGA
GAGGACTCCCTGTCTTCTCTCCATTTTCCTCAGAGTCCTCCTGAGTGGGAGGACTCCCTCTCTCCTC
TC
CACTTTCCTCAGTTTCCTCCTCAGGGGGAGGACTTCCAGTCTTCTCTCCAGAGTCCTGTGAGTATCTG
C
TCCTCCTCCACTTCTTTGAGTCTTCCCCAGAGTTTCCCTGAGAGTCCTCAGAGTCCTCCTGAGGGGCCT
GCT
CAGTCTCCTCTCCAGAGACCTGTCAGCTCCTTCTTCTCCTACACTTTAGCGAGTCTTCTCCAAAGTT
CC
CATGAGAGTCCTCAGAGTCCTCCTGAGGGGCCTGCCCAGTCTCCTCTCCAGAGTCCTGTGAGCTCCTT
C
CCCTCCTCCACTTCATCGAGTCTTTCCCAGAGTTCTCCTGTGAGCTCCTTCCCCTCCTCCACTTCATCG
AGT
CTTTCCAAGAGTTCCCCTGAGAGTCCTCTCCAGAGTCCTGTGATCTCCTTCTCCTCCTCCACTTCAT
TG
AGCCCATTCAGTGAAGAGTCCAGCAGCCCAGTAGATGAATATACAAGTTCCTCAGACACCTTGCTAGA
G
AGTGATTCCTTGACAGACAGCGAGTCCTTGATAGAGAGCGAGCCCTTGTTCACTTATACACTGGATGAA
AAG
GTGGACGAGTTGGCGCGGTTTCTTCTCCTCAAATATCAAGTGAAGCAGCCTATCACAAAGGCAGAGA
TG
CTGACGAATGTCATCAGCAGGTACACGGGCTACTTTCCTGTGATCTTCAGGAAAGCCCGTGAGTTCAT
A
GAGATACTTTTTGGCATTTCCCTGAGAGAAGTGGACCCTGATGACTCCTATGTCTTTGTAAACACATTA
GAC
CTCACCTCTGAGGGGTGTCTGAGTGATGAGCAGGGCATGTCCCAGAACCGCCTCCTGATTCTTATTC
TG
AGTATCATCTTCATAAAGGGCACCTATGCCTCTGAGGAGGTCATCTGGGATGTGCTGAGTGGAATAGG
G
GTGCGTGCTGGGAGGGAGCACTTTGCCTTTGGGGAGCCCAGGGAGCTCCTCACTAAAGTTTGGGTGCAG
GAA
CATTACCTAGAGTACCGGGAGGTGCCCAACTCTTCTCCTCCTCGTTACGAATTCCTGTGGGGTCCAA
GA
GCTCATTCAGAAGTCATTAAGAGGAAAGTAGTAGAGTTTTTGGCCATGCTAAAGAATACCGTCCCTAT
T
ACCTTTCCATCCTCTTACAAGGATGCTTTGAAAGATGTGGAAGAGAGAGCCCAGGCCATAATTGACACC
ACA
GATGATTCGACTGCCACAGAAAGTGCAAGCTCCAGTGTCATGTCCCCCAGCTTCTCTTCTGAGTGA


Translation (1142 aa):
MGDKDMPTAGMPSLLQSSSESPQSCPEGEDSQSPLQIPQSSPESDDTLYPLQSPQSRSEGEDSSDPLQRP
P
EGKDSQSPLQIPQSSPEGDDTQSPLQNSQSSPEGKDSLSPLEISQSPPEGEDVQSPLQNPASSFFSSAL
L
SIFQSSPESTQSPFEGFPQSVLQIPVSAASSSTLVSIFQSSPESTQSPFEGFPQSPLQIPVSRSFSSTL
L
SIFQSSPERTQSTFEGFAQSPLQIPVSPSSSSTLLSLFQSFSERTQSTFEGFAQSSLQIPVSPSFSSTL
V
SLFQSSPERTQSTFEGFPQSPLQIPVSSSSSSTLLSLFQSSPERTHSTFEGFPQSLLQIPMTSSFSSTL
L
SIFQSSPESAQSTFEGFPQSPLQIPGSPSFSSTLLSLFQSSPERTHSTFEGFPQSPLQIPMTSSFSSTL
L
SILQSSPESAQSAFEGFPQSPLQIPVSSSFSYTLLSLFQSSPERTHSTFEGFPQSPLQIPVSSSSSSST
L
LSLFQSSPECTQSTFEGFPQSPLQIPQSPPEGENTHSPLQIVPSLPEWEDSLSPHYFPQSPPQGEDSLS
P
HYFPQSPPQGEDSLSPHYFPQSPQGEDSLSPHYFPQSPPQGEDSMSPLYFPQSPLQGEEFQSSLQSPVS
I
CSSSTPSSLPQSFPESSQSPPEGPVQSPLHSPQSPPEGMHSQSPLQSPESAPEGEDSLSPLQIPQSPLE
G
EDSLSSLHFPQSPPEWEDSLSPLHFPQFPPQGEDFQSSLQSPVSICSSSTSLSLPQSFPESPQSPPEGP
A
QSPLQRPVSSFFSYTLASLLQSSHESPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSS
S
LSKSSPESPLQSPVISFSSSTSLSPFSEESSSPVDEYTSSSDTLLESDSLTDSESLIESEPLFTYTLDE
K
VDELARFLLLKYQVKQPITKAEMLTNVISRYTGYFPVIFRKAREFIEILFGISLREVDPDDSYVFVNTL
D
LTSEGCLSDEQGMSQNRLLILILSIIFIKGTYASEEVIWDVLSGIGVRAGREHFAFGEPRELLTKVWVQ
E
HYLEYREVPNSSPPRYEFLWGPRAHSEVIKRKVVEFLAMLKNTVPITFPSSYKDALKDVEERAQAIIDT
T
DDSTATESASSSVMSPSFSSE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser