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Report for CCDS35235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35235.1 Public Homo sapiens X ZNF182 24 110 108 CCDS HistoryNCBI Gene:7569Re-query CCDS DB by CCDS ID:35235.1Re-query CCDS DB by GeneID:7569See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376943.8 ENSP00000366142.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376943.8Link to Ensembl Protein Viewer:ENSP00000366142.4Re-query CCDS DB by Nucleotide ID:ENST00000376943Re-query CCDS DB by Protein ID:ENSP00000366142
Original member Current member NCBI NM_001007088.2 NP_001007089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007088.2Link to Protein Sequence:NP_001007089.1Re-query CCDS DB by Nucleotide ID:NM_001007088Re-query CCDS DB by Protein ID:NP_001007089Link to BLAST:NP_001007089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007089.1 620 P17025-2 620 100% 0 0

Chromosomal Locations for CCDS 35235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47976167 47977797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47982949 47983038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47983285 47983411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48002595 48002609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGCCAAACCCCAGGGGCTAGTGACATTTGAAGATGTAGCTGTGGATTTCACCCAGGAGGAGTGGCAGT
AC
CTGAACCCACCACAGAGGACCCTGTACAGAGACGTGATGCTGGAGACCTACAGCAACTTGGTCTTTGT
G
GGGCAGCAGGTTACCAAACCAAACCTCATCCTCAAGTTGGAGGTAGAAGAATGCCCGGCAGAAGGAAAA
ATC
CCATTTTGGAACTTTCCAGAAGTCTGTCAAGTTGATGAACAGATTGAGAGGCAACATCAGGATGACC
AA
GATAAATGTCTGCTGATGCAAGTTGGATTTTCTGACAAGAAAACAATTATCACCAAGAGTGCTCGTGA
C
TGTCATGAGTTTGGAAACATACTTCATCTGAGTACAAACCTTGTTGCTTCAATACAAAGACCCGATAAA
CAC
GAATCATTTGGAAATAATATGGTAGATAATTTAGACTTATTTAGTAGAAGTTCTGCAGAAAATAAAT
AT
GATAATGGATGTGCAAAATTGTTCTTCCATACTGAGTATGAGAAAACAAATCCTGGAATGAAGCCCTA
T
GGCTATAAAGAGTGTGGGAAAGGTCTTAGGCGAAAGAAAGGCCTTAGTCTACATCAGAGAATTAAAAAT
GGA
GAGAAACCCTTTGAATGTACTGCATGTAGGAAAACCTTCAGCAAGAAGTCACACCTCATTGTACATT
GG
AGAACTCATACGGGAGAGAAACCTTTTGGATGTACCGAATGTGGAAAAGCTTTTAGCCAAAAATCTCA
G
CTCATTATACACTTGCGAACTCATACAGGAGAGAGACCCTTTGAGTGTCCTGAATGTGGAAAAGCCTTC
AGA
GAAAAGTCAACTGTCATCATACATTACAGGACTCACACAGGAGAAAAACCTTATGAATGTAATGAAT
GT
GGAAAAGCCTTCACTCAGAAGTCCAACCTCATTGTCCATCAGAAAACCCACACTGGAGAGAAAACCTA
T
GAATGCACTAAATGTGGAGAATCTTTCATACAGAAGCTTGATCTAATTATACATCATAGTACCCATACA
GGA
AAGAAACCCCATGAATGTAATGAGTGTAAGAAAACTTTCAGTGATAAGTCAACTCTCATTATACACC
AG
AGAACTCATACGGGAGAGAAACCTCATAAATGTACTGAATGTGGGAAGTCTTTCAATGAGAAGTCAAC
C
CTCATTGTGCATCAAAGAACTCATACAGGAGAGAAACCCTATGAATGTGATGTGTGTGGAAAAACCTTC
ACG
CAAAAGTCAAACCTTGGTGTACATCAGAGAACTCATTCAGGAGAGAAACCCTTTGAATGTAATGAAT
GT
GAGAAAGCCTTCTCTCAGAAGTCCTACCTCATGCTGCATCAGAGAGGTCATACAGGAGAGAAACCTTA
C
GAGTGCAATGAATGTGAAAAAGCATTTTCACAGAAATCATATCTCATTATACATCAAAGAACTCATACA
GAA
GAAAAACCCTATAAATGTAATGAATGTGGCAAAGCCTTCAGAGAAAAGTCAAAGCTCATTATACATC
AG
AGAATTCATACAGGAGAGAAACCTTATGAATGTCCTGTGTGTTGGAAAGCTTTTAGCCAGAAGTCACA
G
CTCATAATACATCAGAGAACGCACACGGGAGAGAAACCCTATGCATGCACTGAGTGTGGCAAAGCCTTC
CGA
GAAAAGTCAACATTCACTGTACATCAAAGAACTCATACTGGAGAGAAACCCTATAAATGTACAGAAT
GT
GGGAAAGCCTTTACCCAAAAATCAAACCTTATTGTACATCAGCGAACCCATGCAGGAAAGAAAGCCCA
T
GGAAGAGGCCACACTCGGAAGTCAAAGTTCATGGCACATTAG


Translation (620 aa):
MAKPQGLVTFEDVAVDFTQEEWQYLNPPQRTLYRDVMLETYSNLVFVGQQVTKPNLILKLEVEECPAEGK
I
PFWNFP
EVCQVDEQIERQHQDDQDKCLLMQVGFSDKKTIITKSARDCHEFGNILHLSTNLVASIQRPDK
H
ESFGNNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLHQRIKN
G
EKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAF
R
EKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHT
G
KKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTF
T
QKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHT
E
EKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAF
R
EKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHAGKKAHGRGHTRKSKFMAH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser