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Report for CCDS35090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35090.1 Public Homo sapiens 9 OR13C8 24 110 108 CCDS HistoryNCBI Gene:138802Re-query CCDS DB by CCDS ID:35090.1Re-query CCDS DB by GeneID:138802See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335040.1 ENSP00000334068.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335040.1Link to Ensembl Protein Viewer:ENSP00000334068.1Re-query CCDS DB by Nucleotide ID:ENST00000335040Re-query CCDS DB by Protein ID:ENSP00000334068
Original member Current member NCBI NM_001004483.1 NP_001004483.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004483.1Link to Protein Sequence:NP_001004483.1Re-query CCDS DB by Nucleotide ID:NM_001004483Re-query CCDS DB by Protein ID:NP_001004483Link to BLAST:NP_001004483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004483.1 320 Q8NGS7 320 100% 0 0

Chromosomal Locations for CCDS 35090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104569168 104570130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGAAAGGACCAACGATTCCACGTCGACAGAATTTTTCCTGGTAGGGCTTTCTGCCCACCCAAAGCTCC
AGACAGTTTTCTTCGTTCTAATTTTGTGGATGTACCTGATGATCCTGCTTGGAAATGGAGTCCTTATCTC
AGTTATCATCTTTGATTCTCACCTGCACACCCCCATGTATTTCTTCCTCTGTAATCTTTCCTTCCTCGAC
GTTTGCTACACAAGTTCCTCTGTCCCACTAATTCTTGCCAGCTTTCTGGCAGTAAAGAAAAAGGTTTCCT
TCTCTGGGTGTATGGTGCAAATGTTTATTTCTTTTGCCATGGGGGCCACGGAGTGCATGATCTTAGGCAC
GATGGCACTGGACCGCTATGTGGCCATCTGCTACCCACTGAGATACCCTGTCATCATGAGCAAGGGTGCC
TATGTGGCCATGGCAGCTGGGTCCTGGGTCACTGGGCTTGTGGACTCAGTAGTGCAGACAGCTTTTGCAA
TGCAGTTACCATTCTGTGCTAATAATGTCATTAAACATTTTGTCTGTGAAATTCTGGCTATCTTGAAACT
GGCCTGTGCTGATATTTCAATCAATGTGATTAGTATGACAGGGTCGAATCTGATTGTTCTGGTTATTCCA
TTGTTAGTAATTTCCATCTCTTACATATTTATTGTTGCCACTATTCTGAGGATTCCTTCCACTGAAGGAA
AACATAAGGCCTTCTCCACCTGCTCAGCCCACCTGACAGTGGTGATTATATTCTATGGAACCATCTTCTT
CATGTACGCAAAGCCTGAGTCTAAAGCCTCTGTTGATTCAGGTAATGAAGACATCATTGAGGCCCTCATC
TCCCTTTTCTATGGAGTGATGACTCCCATGCTTAATCCTCTCATCTATAGTCTGCGAAACAAGGATGTAA
AGGCTGCTGTCAAAAACATACTGTGTAGGAAAAACTTTTCTGATGGAAAATGA

Translation (320 aa):
MERTNDSTSTEFFLVGLSAHPKLQTVFFVLILWMYLMILLGNGVLISVIIFDSHLHTPMYFFLCNLSFLD
VCYTSSSVPLILASFLAVKKKVSFSGCMVQMFISFAMGATECMILGTMALDRYVAICYPLRYPVIMSKGA
YVAMAAGSWVTGLVDSVVQTAFAMQLPFCANNVIKHFVCEILAILKLACADISINVISMTGSNLIVLVIP
LLVISISYIFIVATILRIPSTEGKHKAFSTCSAHLTVVIIFYGTIFFMYAKPESKASVDSGNEDIIEALI
SLFYGVMTPMLNPLIYSLRNKDVKAAVKNILCRKNFSDGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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