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Report for CCDS3470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3470.1 Public Homo sapiens 4 GABRG1 24 110 108 CCDS HistoryNCBI Gene:2565Re-query CCDS DB by CCDS ID:3470.1Re-query CCDS DB by GeneID:2565See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295452.5 ENSP00000295452.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295452.5Link to Ensembl Protein Viewer:ENSP00000295452.4Re-query CCDS DB by Nucleotide ID:ENST00000295452Re-query CCDS DB by Protein ID:ENSP00000295452
Original member Current member NCBI NM_173536.4 NP_775807.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173536.4Link to Protein Sequence:NP_775807.2Re-query CCDS DB by Nucleotide ID:NM_173536Re-query CCDS DB by Protein ID:NP_775807Link to BLAST:NP_775807.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775807.2 465 Q8N1C3 465 100% 0 0

Chromosomal Locations for CCDS 3470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46040988 46041254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46051424 46051638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46058217 46058369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46058485 46058622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46064441 46064523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46065364 46065584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46083986 46084053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46097201 46097349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46123810 46123913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGGTCCTTTGAAAGCTTTTCTCTTCTCCCCTTTTCTTCTGCGGAGTCAAAGTAGAGGGGTGAGGTTGG
TCTTCTTGTTACTGACCCTGCATTTGGGAAACTGTGTTGATAAGGCAGATGATGAAGATGATGAGGATTT
AACGGTGAACAAAACCTGGGTCTTGGCCCCAAAAATTCATGAAGGAGATATCACACAAATTCTGAATTCA
TTGCTTCAAGGCTATGACAATAAACTTCGTCCAGATATAGGAGTGAGGCCCACAGTAATTGAAACTGATG
TTTATGTAAACAGCATTGGACCAGTTGATCCAATTAATATGGAATATACAATAGATATAATTTTTGCCCA
AACCTGGTTTGACAGTCGTTTAAAATTCAATAGTACCATGAAAGTGCTTATGCTTAACAGTAATATGGTT
GGAAAAATTTGGATTCCTGACACTTTCTTCAGAAACTCAAGAAAATCTGATGCTCACTGGATAACAACTC
CTAATCGTCTGCTTCGAATTTGGAATGATGGACGAGTTCTGTATACTCTAAGATTGACAATTAATGCAGA
ATGTTATCTTCAGCTTCATAACTTTCCCATGGATGAACATTCCTGTCCACTGGAATTTTCAAGCTATGGA
TACCCTAAAAATGAAATTGAGTATAAGTGGAAAAAGCCCTCCGTAGAAGTGGCTGATCCTAAATACTGGA
GATTATATCAGTTTGCATTTGTAGGGTTACGGAACTCAACTGAAATCACTCACACGATCTCTGGGGATTA
TGTTATCATGACAATTTTTTTTGACCTGAGCAGAAGAATGGGATATTTCACTATTCAGACCTACATTCCA
TGCATTCTGACAGTTGTTCTTTCTTGGGTGTCTTTTTGGATCAATAAAGATGCAGTGCCTGCAAGAACAT
CGTTGGGTATCACTACAGTTCTGACTATGACAACCCTGAGTACAATTGCCAGGAAGTCTTTACCTAAGGT
TTCTTATGTGACTGCGATGGATCTCTTTGTTTCTGTTTGTTTCATTTTTGTTTTTGCAGCCTTGATGGAA
TATGGAACCTTGCATTATTTTACCAGCAACCAAAAAGGAAAGACTGCTACTAAAGACAGAAAGCTAAAAA
ATAAAGCCTCGATGACTCCTGGTCTCCATCCTGGATCCACTCTGATTCCAATGAATAATATTTCTGTGCC
GCAAGAAGATGATTATGGGTATCAGTGTTTGGAGGGCAAAGATTGTGCCAGCTTCTTCTGTTGCTTTGAA
GACTGCAGAACAGGATCTTGGAGGGAAGGAAGGATACACATACGCATTGCCAAAATTGACTCTTATTCTA
GAATATTTTTCCCAACCGCTTTTGCCCTGTTCAACTTGGTTTATTGGGTTGGCTATCTTTACTTATAA

Translation (465 aa):
MGPLKAFLFSPFLLRSQSRGVRLVFLLLTLHLGNCVDKADDEDDEDLTVNKTWVLAPKIHEGDITQILNS
LLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFNSTMKVLMLNSNMV
GKIWIPDTFFRNSRKSDAHWITTPNRLLRIWNDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYG
YPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLRNSTEITHTISGDYVIMTIFFDLSRRMGYFTIQTYIP
CILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALME
YGTLHYFTSNQKGKTATKDRKLKNKASMTPGLHPGSTLIPMNNISVPQEDDYGYQCLEGKDCASFFCCFE
DCRTGSWREGRIHIRIAKIDSYSRIFFPTAFALFNLVYWVGYLYL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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