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Report for CCDS34523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34523.1 Public Homo sapiens 6 GOPC 24 110 108 CCDS HistoryNCBI Gene:57120Re-query CCDS DB by CCDS ID:34523.1Re-query CCDS DB by GeneID:57120See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000052569.10 ENSP00000052569.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000052569.10Link to Ensembl Protein Viewer:ENSP00000052569.6Re-query CCDS DB by Nucleotide ID:ENST00000052569Re-query CCDS DB by Protein ID:ENSP00000052569
Original member Current member NCBI NM_001017408.3 NP_001017408.1 Accepted alive Link to Nucleotide Sequence:NM_001017408.3Link to Protein Sequence:NP_001017408.1Re-query CCDS DB by Nucleotide ID:NM_001017408Re-query CCDS DB by Protein ID:NP_001017408Link to BLAST:NP_001017408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017408.1 454 Q9HD26-2 454 100% 0 0

Chromosomal Locations for CCDS 34523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 117563254 117563384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117566854 117567034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117569572 117569736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117570860 117570955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117573467 117573632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117575177 117575352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117578900 117579064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117602004 117602288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGTCGGCGGGCGGTCCATGCCCAGCAGCAGCCGGAGGGGGCCCAGGGGGCGCCTCCTGCTCCGTGGGGG
CCCCTGGCGGGGTATCCATGTTCCGGTGGCTGGAGGTGCTGGAGAAGGAGTTCGACAAAGCTTTTGTGGA
TGTGGATCTGCTCCTGGGAGAGATCGATCCAGACCAAGCGGACATCACTTATGAGGGGCGACAGAAGATG
ACCAGCCTGAGCTCCTGCTTTGCACAGCTTTGCCACAAAGCCCAGTCTGTGTCTCAAATCAACCACAAGC
TGGAGGCACAGTTGGTGGATCTGAAATCTGAACTGACAGAAACCCAAGCAGAGAAAGTTGTTTTGGAGAA
AGAAGTACATGATCAGCTTTTACAGCTGCACTCTATTCAGCTGCAGCTTCATGCTAAAACTGGTCAAAGT
GCTGACTCTGGTACCATTAAGGCAAAATTGGAAAGAGAGCTTGAGGCAAACAAAAAAGAAAAAATGAAAG
AAGCACAACTTGAAGCTGAAGTGAAATTGTTGAGAAAAGAGAATGAAGCCCTTCGTAGACATATAGCTGT
TCTCCAGGCTGAAGTATATGGGGCGAGACTAGCTGCCAAGTACTTGGATAAGGAACTGGCAGGAAGGGTC
CAACAGATACAATTGCTAGGACGAGATATGAAGGGACCTGCTCATGATAAGCTTTGGAACCAATTAGAAG
CTGAAATACATTTGCATCGTCACAAAACTGTGATCCGAGCCTGCAGAGGACGTAATGACTTGAAACGACC
AATGCAAGCACCACCAGGCCATGATCAAGATTCCCTAAAGAAAAGCCAAGGTGTTGGTCCAATTAGAAAA
GTTCTCCTCCTTAAGGAAGATCATGAAGGCCTTGGCATTTCAATTACAGGTGGGAAAGAACATGGTGTTC
CAATCCTCATCTCTGAGATCCATCCGGGGCAACCTGCTGATAGATGCGGAGGGCTGCACGTTGGGGATGC
TATTTTGGCAGTCAACGGAGTTAACCTAAGGGACACAAAGCATAAAGAAGCTGTAACTATTCTTTCTCAG
CAGAGAGGAGAGATTGAATTTGAAGTAGTTTATGTGGCTCCTGAAGTGGATTCTGATGATGAAAACGTAG
AGTATGAAGATGAGAGTGGACATCGTTACCGTTTGTACCTTGATGAGTTAGAAGGAGGTGGTAACCCTGG
TGCTAGTTGCAAAGACACAAGTGGGGAAATCAAAGTATTACAAGGATTTAATAAGAAGGCAGTAACTGAC
ACACATGAAAATGGAGACCTGGGCACTGCAAGTGAAACTCCGCTAGATGACGGTGCTTCAAAATTAGATG
ATCTGCACACTCTGTATCATAAAAAATCTTATTAA

Translation (454 aa):
MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQADITYEGRQKM
TSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVHDQLLQLHSIQLQLHAKTGQS
ADSGTIKAKLERELEANKKEKMKEAQLEAEVKLLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRV
QQIQLLGRDMKGPAHDKLWNQLEAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIRK
VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ
QRGEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQGFNKKAVTD
THENGDLGTASETPLDDGASKLDDLHTLYHKKSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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