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Report for CCDS34217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34217.1 Public Homo sapiens 5 SNX2 24 110 108 CCDS HistoryNCBI Gene:6643Re-query CCDS DB by CCDS ID:34217.1Re-query CCDS DB by GeneID:6643See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379516.7 ENSP00000368831.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379516.7Link to Ensembl Protein Viewer:ENSP00000368831.2Re-query CCDS DB by Nucleotide ID:ENST00000379516Re-query CCDS DB by Protein ID:ENSP00000368831
Original member Current member NCBI NM_003100.4 NP_003091.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003100.4Link to Protein Sequence:NP_003091.2Re-query CCDS DB by Nucleotide ID:NM_003100Re-query CCDS DB by Protein ID:NP_003091Link to BLAST:NP_003091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003091.2 519 O60749-1 519 100% 0 0

Chromosomal Locations for CCDS 34217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122775104 122775211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122795266 122795383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122799692 122799855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122801869 122801935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122802081 122802124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122803472 122803613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122808277 122808355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122815896 122815971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122816915 122817028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122817280 122817373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122818818 122819023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122826050 122826193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122827379 122827459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122827575 122827646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122829598 122829648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCGGCCGAGAGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCGACTTTGAGGATCTGGAGGACG
GAGAGGACCTGTTCACCAGCACTGTCTCCACCCTAGAGTCAAGTCCATCATCTCCAGAACCAGCTAGTCT
TCCTGCAGAAGATATTAGTGCAAACTCCAATGGCCCAAAACCCACAGAAGTTGTATTAGATGATGACAGA
GAAGATCTTTTTGCAGAAGCCACAGAAGAAGTTTCTTTGGACAGCCCTGAAAGGGAACCTATCCTATCCT
CGGAACCTTCTCCTGCAGTCACACCTGTCACTCCTACTACACTCATTGCTCCTAGAATTGAATCAAAGAG
TATGTCTGCTCCCGTGATCTTTGATAGATCCAGGGAAGAGATTGAAGAAGAAGCAAATGGAGACATTTTT
GACATAGAAATTGGTGTATCAGATCCAGAAAAAGTTGGTGATGGCATGAATGCCTATATGGCATATAGAG
TAACAACAAAGACATCTCTTTCCATGTTCAGTAAGAGTGAATTTTCAGTGAAAAGAAGATTCAGCGACTT
TCTTGGTTTGCACAGCAAATTAGCAAGCAAATATTTACATGTTGGTTATATTGTGCCACCAGCTCCAGAA
AAGAGTATAGTAGGGATGACCAAGGTCAAAGTGGGTAAAGAAGACTCATCATCCACTGAGTTTGTAGAAA
AACGGAGAGCAGCTCTTGAAAGGTATCTTCAAAGAACAGTAAAACATCCAACTTTACTACAGGATCCTGA
TTTAAGGCAGTTCTTGGAAAGTTCAGAGCTGCCTAGAGCAGTTAATACACAGGCTCTGAGTGGAGCAGGA
ATATTGAGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATG
CATGGTTTGAAGAAAAGCAGCAGCAATTTGAGAATCTGGATCAGCAACTTAGGAAACTTCATGTCAGTGT
TGAAGCCTTGGTCTGTCATAGAAAAGAACTTTCAGCCAACACAGCTGCCTTTGCTAAAAGTGCTGCCATG
TTAGGTAATTCTGAGGATCATACTGCTTTATCTAGAGCTTTGTCTCAGCTTGCAGAGGTTGAGGAGAAGA
TAGACCAGTTACATCAAGAACAAGCTTTTGCTGACTTTTATATGTTTTCAGAACTACTTAGTGACTACAT
TCGTCTTATTGCTGCAGTGAAAGGTGTGTTTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCT
CAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCAGATAAAATAC
AGCAAGCTAAAAATGAAATAAGAGAGTGGGAGGCGAAAGTGCAACAAGGGGAAAGAGATTTTGAACAGAT
ATCTAAAACGATTCGAAAAGAAGTGGGAAGATTTGAGAAAGAACGAGTGAAGGATTTTAAAACCGTTATC
ATCAAGTACTTAGAATCACTAGTTCAAACACAACAACAGCTGATAAAATACTGGGAAGCATTCCTACCTG
AAGCCAAAGCCATTGCCTAG

Translation (519 aa):
MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPKPTEVVLDDDR
EDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAPVIFDRSREEIEEEANGDIF
DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPE
KSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAG
ILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAM
LGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA
QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI
IKYLESLVQTQQQLIKYWEAFLPEAKAIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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