NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33190.1 Public Homo sapiens 2 PREPL 24 110 108 CCDS HistoryNCBI Gene:9581Re-query CCDS DB by CCDS ID:33190.1Re-query CCDS DB by GeneID:9581See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260648.10 ENSP00000260648.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260648.10Link to Ensembl Protein Viewer:ENSP00000260648.6Re-query CCDS DB by Nucleotide ID:ENST00000260648Re-query CCDS DB by Protein ID:ENSP00000260648
Original member Current member EBI ENST00000410081.5 ENSP00000386509.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410081.5Link to Ensembl Protein Viewer:ENSP00000386509.1Re-query CCDS DB by Nucleotide ID:ENST00000410081Re-query CCDS DB by Protein ID:ENSP00000386509
Original member Current member EBI ENST00000409936.5 ENSP00000386543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409936.5Link to Ensembl Protein Viewer:ENSP00000386543.1Re-query CCDS DB by Nucleotide ID:ENST00000409936Re-query CCDS DB by Protein ID:ENSP00000386543
Original member Current member EBI ENST00000409272.5 ENSP00000386909.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409272.5Link to Ensembl Protein Viewer:ENSP00000386909.1Re-query CCDS DB by Nucleotide ID:ENST00000409272Re-query CCDS DB by Protein ID:ENSP00000386909
Original member Current member EBI ENST00000425263.5 ENSP00000391456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425263.5Link to Ensembl Protein Viewer:ENSP00000391456.1Re-query CCDS DB by Nucleotide ID:ENST00000425263Re-query CCDS DB by Protein ID:ENSP00000391456
Original member Current member EBI ENST00000426481.5 ENSP00000409480.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426481.5Link to Ensembl Protein Viewer:ENSP00000409480.1Re-query CCDS DB by Nucleotide ID:ENST00000426481Re-query CCDS DB by Protein ID:ENSP00000409480
Original member Current member NCBI NM_001171603.1 NP_001165074.1 Accepted alive Link to Nucleotide Sequence:NM_001171603.1Link to Protein Sequence:NP_001165074.1Re-query CCDS DB by Nucleotide ID:NM_001171603Re-query CCDS DB by Protein ID:NP_001165074Link to BLAST:NP_001165074.1
Original member Current member NCBI NM_001171606.2 NP_001165077.1 Accepted alive Link to Nucleotide Sequence:NM_001171606.2Link to Protein Sequence:NP_001165077.1Re-query CCDS DB by Nucleotide ID:NM_001171606Re-query CCDS DB by Protein ID:NP_001165077Link to BLAST:NP_001165077.1
Original member Current member NCBI NM_001374275.1 NP_001361204.1 Accepted alive Link to Nucleotide Sequence:NM_001374275.1Link to Protein Sequence:NP_001361204.1Re-query CCDS DB by Nucleotide ID:NM_001374275Re-query CCDS DB by Protein ID:NP_001361204Link to BLAST:NP_001361204.1
Original member Current member NCBI NM_001374276.1 NP_001361205.1 Accepted alive Link to Nucleotide Sequence:NM_001374276.1Link to Protein Sequence:NP_001361205.1Re-query CCDS DB by Nucleotide ID:NM_001374276Re-query CCDS DB by Protein ID:NP_001361205Link to BLAST:NP_001361205.1
Original member Current member NCBI NM_006036.4 NP_006027.2 Accepted alive Link to Nucleotide Sequence:NM_006036.4Link to Protein Sequence:NP_006027.2Re-query CCDS DB by Nucleotide ID:NM_006036Re-query CCDS DB by Protein ID:NP_006027Link to BLAST:NP_006027.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165074.1 727 Q4J6C6-1 727 100% 0 0
NP_001165077.1 727 Q4J6C6-1 727 100% 0 0
NP_001361204.1 727 Q4J6C6-1 727 100% 0 0
NP_001361205.1 727 Q4J6C6-1 727 100% 0 0
NP_006027.2 727 Q4J6C6-1 727 100% 0 0

Chromosomal Locations for CCDS 33190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44321356 44321445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44321827 44321900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44322731 44322854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44323262 44323411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44326712 44326928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44328937 44329112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44332459 44332656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44338351 44338536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44339147 44339363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44342417 44342552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44343745 44343951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44344520 44344586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44346268 44346390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44359497 44359715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGCAGCAGAAGACCAAATTATTTCTCCAAGCTTTGAAGTATAGTATTCCTCACCTTGGAAAATGCATGC
AGAAACAGCATTTGAATCACTATAACTTCGCTGATCATTGTTACAATAGAATAAAATTGAAAAAATATCA
CCTAACCAAGTGTCTTCAGAATAAACCCAAGATATCAGAGTTAGCAAGAAACATCCCAAGTCGGAGCTTC
TCATGTAAGGATCTTCAGCCTGTTAAACAAGAAAACGAAAAACCCCTTCCAGAAAACATGGATGCATTTG
AAAAAGTGAGAACAAAATTAGAAACACAGCCACAAGAAGAATATGAAATCATCAATGTGGAAGTTAAACA
TGGTGGTTTTGTTTATTACCAAGAAGGTTGTTGCTTGGTTCGTTCCAAAGATGAAGAAGCAGACAATGAT
AATTATGAAGTTTTATTCAATTTGGAGGAACTTAAGTTAGACCAGCCCTTCATTGATTGTATCAGAGTTG
CTCCAGATGAAAAATATGTGGCTGCCAAGATAAGAACTGAAGATTCTGAAGCATCTACCTGTGTAATTAT
AAAGCTCAGCGATCAGCCCGTAATGGAAGCTTCTTTCCCGAATGTGTCCAGTTTTGAATGGGTAAAGGAC
GAGGAAGATGAAGATGTTTTATTCTACACCTTCCAGAGGAACCTTCGCTGTCATGACGTATATCGAGCCA
CTTTTGGTGATAACAAACGTAATGAACGCTTTTACACAGAAAAAGACCCAAGCTACTTTGTTTTCCTTTA
TCTTACAAAAGACAGTCGTTTCCTCACCATAAATATTATGAACAAGACTACTTCTGAAGTGTGGTTGATA
GATGGCCTGAGCCCTTGGGACCCACCAGTACTTATCCAGAAGCGAATACATGGGGTCCTTTACTATGTTG
AACACAGAGATGATGAATTATACATTCTCACTAATGTTGGAGAACCTACAGAATTTAAGCTAATGAGAAC
AGCGGCTGATACCCCTGCAATTATGAATTGGGATTTATTTTTTACAATGAAGAGAAATACAAAAGTGATA
GACTTGGACATGTTTAAGGATCACTGTGTTCTATTTCTGAAGCACAGCAATCTCCTTTATGTTAATGTGA
TTGGTCTGGCTGATGATTCAGTTCGGTCTCTAAAGCTCCCTCCTTGGGCCTGTGGATTCATAATGGATAC
AAATTCTGACCCAAAGAACTGCCCCTTTCAACTTTGCTCTCCAATACGTCCCCCAAAATATTACACATAC
AAGTTTGCAGAAGGCAAACTGTTTGAGGAAACTGGGCATGAAGACCCAATCACAAAGACTAGTCGCGTTT
TACGTCTAGAAGCCAAAAGCAAGGATGGAAAATTAGTGCCAATGACTGTTTTCCACAAAACTGACTCTGA
GGACTTGCAGAAGAAACCTCTCTTGGTACATGTATATGGAGCTTATGGAATGGATTTGAAAATGAATTTC
AGGCCTGAGAGGCGGGTCCTGGTGGATGATGGATGGATATTAGCATACTGCCATGTTCGAGGTGGTGGTG
AGTTAGGCCTCCAGTGGCACGCTGATGGCCGCCTAACTAAAAAACTCAATGGCCTTGCTGATTTAGAGGC
TTGCATTAAGACGCTTCATGGCCAAGGCTTTTCTCAGCCAAGTCTAACAACCCTGACTGCTTTCAGTGCT
GGAGGGGTGCTTGCAGGAGCATTGTGTAATTCTAATCCAGAGCTGGTGAGAGCGGTGACTTTGGAGGCAC
CTTTCTTGGATGTTCTCAACACCATGATGGACACTACACTTCCTCTGACATTAGAAGAATTAGAAGAATG
GGGGAATCCTTCATCTGATGAAAAACACAAGAACTACATAAAACGTTACTGTCCCTATCAAAATATTAAA
CCTCAGCATTATCCTTCAATTCACATAACGGCATATGAAAACGATGAACGGGTACCTCTGAAAGGAATTG
TAAGTTATACTGAGAAACTCAAGGAAGCCATCGCGGAGCATGCTAAGGACACAGGTGAAGGCTATCAGAC
CCCTAATATTATTCTAGATATTCAGCCTGGAGGCAATCATGTAATTGAGGATTCTCACAAAAAGATTACA
GCCCAAATTAAATTCCTGTACGAGGAACTTGGACTTGACAGCACCAGTGTTTTCGAGGATCTTAAGAAAT
ACCTGAAATTCTGA

Translation (727 aa):
MQQKTKLFLQALKYSIPHLGKCMQKQHLNHYNFADHCYNRIKLKKYHLTKCLQNKPKISELARNIPSRSF
SCKDLQPVKQENEKPLPENMDAFEKVRTKLETQPQEEYEIINVEVKHGGFVYYQEGCCLVRSKDEEADND
NYEVLFNLEELKLDQPFIDCIRVAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVMEASFPNVSSFEWVKD
EEDEDVLFYTFQRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLI
DGLSPWDPPVLIQKRIHGVLYYVEHRDDELYILTNVGEPTEFKLMRTAADTPAIMNWDLFFTMKRNTKVI
DLDMFKDHCVLFLKHSNLLYVNVIGLADDSVRSLKLPPWACGFIMDTNSDPKNCPFQLCSPIRPPKYYTY
KFAEGKLFEETGHEDPITKTSRVLRLEAKSKDGKLVPMTVFHKTDSEDLQKKPLLVHVYGAYGMDLKMNF
RPERRVLVDDGWILAYCHVRGGGELGLQWHADGRLTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSA
GGVLAGALCNSNPELVRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPYQNIK
PQHYPSIHITAYENDERVPLKGIVSYTEKLKEAIAEHAKDTGEGYQTPNIILDIQPGGNHVIEDSHKKIT
AQIKFLYEELGLDSTSVFEDLKKYLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH