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Report for CCDS3254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3254.1 Public Homo sapiens 3 ABCF3 24 110 108 CCDS HistoryNCBI Gene:55324Re-query CCDS DB by CCDS ID:3254.1Re-query CCDS DB by GeneID:55324See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429586.7 ENSP00000411471.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429586.7Link to Ensembl Protein Viewer:ENSP00000411471.2Re-query CCDS DB by Nucleotide ID:ENST00000429586Re-query CCDS DB by Protein ID:ENSP00000411471
Original member Current member NCBI NM_018358.3 NP_060828.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018358.3Link to Protein Sequence:NP_060828.2Re-query CCDS DB by Nucleotide ID:NM_018358Re-query CCDS DB by Protein ID:NP_060828Link to BLAST:NP_060828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060828.2 709 Q9NUQ8-1 709 100% 0 0

Chromosomal Locations for CCDS 3254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184186208 184186280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184186507 184186654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184186796 184186875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187397 184187443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187664 184187761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187861 184187983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188141 184188407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188761 184188841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188929 184188988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189088 184189144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189255 184189277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189388 184189443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189557 184189757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189855 184189931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184190999 184191043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184191123 184191255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184192601 184192689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184192805 184192896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193102 184193234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193365 184193452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193540 184193698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGCGACTTGCGCCGAAATCCTGCGGAGCGAGTTCCCCGAAATTGACGGACAAGTCTTCGACTACGTGA
CCGGCGTCTTGCACAGCGGCAGCGCGGACTTCGAGTCTGTGGATGACCTGGTGGAAGCTGTAGGGGAACT
ATTGCAAGAGGTGTCCGGGGACAGCAAGGATGACGCGGGCATCAGGGCCGTGTGCCAGCGCATGTACAAC
ACTCTGCGTCTGGCTGAGCCACAAAGCCAGGGAAATAGCCAGGTGCTACTGGACGCCCCTATCCAGTTGT
CAAAGATAACGGAGAACTACGACTGTGGAACCAAACTTCCAGGACTGCTAAAGAGGGAACAGTCCTCGAC
AGTGAATGCAAAGAAGTTAGAGAAGGCCGAGGCTCGACTTAAGGCAAAGCAGGAGAAGCGCTCAGAGAAG
GACACGCTCAAGACCAGCAACCCTCTAGTCTTAGAAGAGGCATCAGCCAGCCAGGCAGGCAGCAGAAAGG
AGAGTCGGTTGGAATCATCTGGCAAGAACAAATCCTATGATGTGCGAATTGAGAACTTTGATGTGTCTTT
TGGCGATAGAGTACTGCTGGCTGGAGCGGATGTGAACCTGGCATGGGGCCGCCGTTACGGGCTGGTGGGG
CGGAATGGGTTGGGGAAGACAACGTTACTGAAGATGCTGGCCACCCGGAGTCTGCGGGTTCCAGCCCACA
TTTCCCTGCTGCACGTTGAGCAAGAGGTTGCTGGAGATGACACTCCTGCCCTGCAGAGTGTGCTGGAGAG
TGACAGTGTGCGAGAGGATTTGCTACGGAGGGAGCGGGAGCTCACTGCCCAGATTGCTGCTGGCAGGGCG
GAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCTATGCCAAACTGGAGGAGATTGAGGCTGACAAGGCAC
CTGCCAGGGCATCAGTCATTCTCGCTGGGCTTGGCTTTACCCCTAAAATGCAGCAGCAGCCCACCCGGGA
GTTCTCAGGTGGCTGGAGGATGAGGCTGGCCCTGGCCCGGGCCCTCTTTGCTAGGCCAGATCTTCTGCTG
TTAGATGAACCTACAAACATGCTGGATGTCAGGGCCATCCTGTGGCTGGAGAATTACCTGCAGACGTGGC
CCTCCACCATCCTAGTCGTCTCCCACGACCGCAACTTCTTGAATGCCATCGCCACAGACATCATCCACCT
GCACAGCCAGCGGCTAGATGGTTACCGGGGAGACTTTGAGACCTTCATCAAGAGTAAGCAGGAGCGGCTG
CTCAACCAGCAGCGTGAATATGAGGCGCAGCAGCAGTATCGCCAGCACATCCAGGTTTTCATTGACCGGT
TTCGCTACAATGCCAACAGGGCCTCTCAAGTGCAGAGTAAACTCAAGATGCTGGAGAAGCTGCCTGAGCT
GAAGCCTGTGGACAAGGAATCAGAGGTCGTAATGAAGTTCCCTGATGGGTTTGAGAAGTTCTCGCCGCCA
ATTCTGCAGCTAGATGAGGTGGATTTCTACTACGATCCGAAGCACGTCATCTTCAGTCGCCTCTCTGTGT
CTGCTGATCTCGAGTCTCGCATCTGTGTGGTTGGAGAGAATGGGGCTGGGAAGTCTACCATGCTGAAGCT
GCTTTTGGGGGACCTGGCACCTGTTCGGGGCATCAGACACGCTCACAGGAATCTGAAGATTGGCTATTTC
AGCCAGCACCATGTGGAGCAGCTGGACCTAAACGTCAGTGCTGTGGAACTGCTGGCACGCAAGTTTCCTG
GGCGGCCTGAGGAGGAGTACCGTCACCAGCTGGGTCGGTATGGCATCTCCGGAGAACTGGCCATGCGTCC
TCTTGCCAGCCTGTCTGGGGGCCAGAAGAGCCGAGTGGCCTTTGCTCAGATGACTATGCCCTGCCCCAAC
TTCTACATTCTGGATGAACCCACAAACCACCTGGACATGGAGACCATTGAGGCTCTGGGCCGTGCCCTCA
ACAATTTCAGGGGTGGTGTGATTCTGGTGTCCCACGATGAGCGCTTTATCAGGCTGGTGTGCCGGGAGTT
GTGGGTATGCGAAGGAGGCGGCGTCACCCGTGTGGAAGGAGGATTTGACCAGTACCGCGCCCTCCTCCAG
GAACAGTTCCGCCGCGAAGGCTTCCTCTAG

Translation (709 aa):
MATCAEILRSEFPEIDGQVFDYVTGVLHSGSADFESVDDLVEAVGELLQEVSGDSKDDAGIRAVCQRMYN
TLRLAEPQSQGNSQVLLDAPIQLSKITENYDCGTKLPGLLKREQSSTVNAKKLEKAEARLKAKQEKRSEK
DTLKTSNPLVLEEASASQAGSRKESRLESSGKNKSYDVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVG
RNGLGKTTLLKMLATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDSVREDLLRRERELTAQIAAGRA
EGSEAAELAEIYAKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARALFARPDLLL
LDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERL
LNQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPP
ILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYF
SQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPN
FYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQ
EQFRREGFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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