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Report for CCDS31443.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31443.2 Public Homo sapiens 11 DBX1 24 110 108 CCDS HistoryNCBI Gene:120237Re-query CCDS DB by CCDS ID:31443.2Re-query CCDS DB by GeneID:120237See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31443.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. Additionally, this CCDS representation has an inferred exon combination due to a lack of full-length transcript support for this gene.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31443.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524983.3 ENSP00000436881.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524983.3Link to Ensembl Protein Viewer:ENSP00000436881.2Re-query CCDS DB by Nucleotide ID:ENST00000524983Re-query CCDS DB by Protein ID:ENSP00000436881
Original member Current member NCBI NM_001029865.4 NP_001025036.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029865.4Link to Protein Sequence:NP_001025036.2Re-query CCDS DB by Nucleotide ID:NM_001029865Re-query CCDS DB by Protein ID:NP_001025036Link to BLAST:NP_001025036.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025036.2 343 A6NMT0 343 100% 0 0

Chromosomal Locations for CCDS 31443.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20156214 20156573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20157037 20157239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20159191 20159292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20159958 20160324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGATGTTCCCCGGCCTCCTCGCGCCCCCCGCCGGGTACCCTAGCCTCCTGCGGCCCACGCCCACCTTGA
CGCTGCCCCAGTCCTTGCAGTCGGCATTTTCCGGCCACTCCAGCTTCCTGGTGGAGGATCTGATCCGCAT
CAGCCGACCCCCCGCCTACCTGCCCCGCAGCGTGCCCACCGCCAGCATGTCGCCGCCCAGGCAGGGGGCC
CCCACGGCCCTCACCGACACGGGGGCCTCGGACCTGGGCTCCCCGGGTCCCGGCAGCCGACGGGGCGGCT
CTCCGCCGACTGCCTTCTCCCCTGCCAGCGAGACGACGTTTCTGAAGTTTGGAGTGAACGCCATCCTCTC
CTCGGGGCCCAGAACAGAAACATCCCCAGCCTTGCTCCAGAGCGTCCCTCCCAAGACCTTCGCCTTTCCC
TACTTCGAAGGGTCTTTTCAGCCTTTCATCAGATCTTCTTATTTCCCAGCTTCCTCCAGCGTGGTGCCCA
TCCCCGGGACCTTCTCCTGGCCGCTGGCCGCGCGCGGGAAGCCTCGGCGGGGCATGCTGCGTCGAGCAGT
CTTCTCCGACGTGCAGCGGAAGGCGCTGGAGAAGATGTTCCAGAAGCAGAAGTACATCAGCAAGCCCGAC
CGCAAGAAGCTGGCGGCCAAGCTGGGCCTGAAAGACTCGCAGGTGAAAATCTGGTTCCAGAACCGACGCA
TGAAATGGCGGAACTCCAAGGAGCGCGAACTCCTGTCTAGCGGGGGCTGTCGCGAGCAGACCCTGCCCAC
CAAGCTCAATCCGCACCCGGACCTCAGCGACGTGGGCCAGAAGGGCCCTGGGAACGAAGAGGAGGAGGAG
GGCCCGGGCAGCCCCAGCCACCGCCTGGCCTACCACGCGTCCTCCGACCCCCAGCACCTGCGGGACCCGC
GGCTGCCAGGGCCGCTGCCCCCCTCGCCCGCGCACTCGAGCAGTCCCGGGAAACCTTCGGACTTCTCAGA
TTCCGAGGAGGAAGAGGAGGGCGAGGAACAGGAGGAAATCACCGTGTCCTAG

Translation (343 aa):
MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGA
PTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFP
YFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPD
RKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEE
GPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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