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Report for CCDS31249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31249.1 Public Homo sapiens 10 RBP4 24 110 108 CCDS HistoryNCBI Gene:5950Re-query CCDS DB by CCDS ID:31249.1Re-query CCDS DB by GeneID:5950See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371464.8 ENSP00000360519.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371464.8Link to Ensembl Protein Viewer:ENSP00000360519.3Re-query CCDS DB by Nucleotide ID:ENST00000371464Re-query CCDS DB by Protein ID:ENSP00000360519
Original member Current member EBI ENST00000371467.5 ENSP00000360522.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371467.5Link to Ensembl Protein Viewer:ENSP00000360522.1Re-query CCDS DB by Nucleotide ID:ENST00000371467Re-query CCDS DB by Protein ID:ENSP00000360522
Original member Current member NCBI NM_001323517.1 NP_001310446.1 Accepted alive Link to Nucleotide Sequence:NM_001323517.1Link to Protein Sequence:NP_001310446.1Re-query CCDS DB by Nucleotide ID:NM_001323517Re-query CCDS DB by Protein ID:NP_001310446Link to BLAST:NP_001310446.1
Original member Current member NCBI NM_006744.4 NP_006735.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006744.4Link to Protein Sequence:NP_006735.2Re-query CCDS DB by Nucleotide ID:NM_006744Re-query CCDS DB by Protein ID:NP_006735Link to BLAST:NP_006735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310446.1 201 P02753 201 100% 0 0
NP_006735.2 201 P02753 201 100% 0 0

Chromosomal Locations for CCDS 31249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93592075 93592112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93593823 93594035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93600393 93600499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93600667 93600803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93600918 93601028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGAAGTGGGTGTGGGCGCTCTTGCTGTTGGCGGCGCTGGGCAGCGGCCGCGCGGAGCGCGACTGCCGAG
TGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGCTTCTCTGGGACCTGGTACGCCATGGCCAA
GAAGGACCCCGAGGGCCTCTTTCTGCAGGACAACATCGTCGCGGAGTTCTCCGTGGACGAGACCGGCCAG
ATGAGCGCCACAGCCAAGGGCCGAGTCCGTCTTTTGAATAACTGGGACGTGTGCGCAGACATGGTGGGCA
CCTTCACAGACACCGAGGACCCTGCCAAGTTCAAGATGAAGTACTGGGGCGTAGCCTCCTTTCTCCAGAA
AGGAAATGATGACCACTGGATCGTCGACACAGACTACGACACGTATGCCGTGCAGTACTCCTGCCGCCTC
CTGAACCTCGATGGCACCTGTGCTGACAGCTACTCCTTCGTGTTTTCCCGGGACCCCAACGGCCTGCCCC
CAGAAGCGCAGAAGATTGTAAGGCAGCGGCAGGAGGAGCTGTGCCTGGCCAGGCAGTACAGGCTGATCGT
CCACAACGGTTACTGCGATGGCAGATCAGAAAGAAACCTTTTGTAG

Translation (201 aa):
MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQ
MSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRL
LNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSERNLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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