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Report for CCDS31140.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31140.2 Public Homo sapiens 10 ITIH5 24 110 108 CCDS HistoryNCBI Gene:80760Re-query CCDS DB by CCDS ID:31140.2Re-query CCDS DB by GeneID:80760See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 31140.1
This CCDS ID was withdrawn because the genome contains an insertion and cannot represent the correct protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31140.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613909.4 ENSP00000485414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613909.4Link to Ensembl Protein Viewer:ENSP00000485414.1Re-query CCDS DB by Nucleotide ID:ENST00000613909Re-query CCDS DB by Protein ID:ENSP00000485414
Original member Current member NCBI NM_032817.6 NP_116206.4 Accepted alive Link to Nucleotide Sequence:NM_032817.6Link to Protein Sequence:NP_116206.4Re-query CCDS DB by Nucleotide ID:NM_032817Re-query CCDS DB by Protein ID:NP_116206Link to BLAST:NP_116206.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116206.4 728 Q86UX2-3 728 99.7253% 0 2

Chromosomal Locations for CCDS 31140.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7563083 7563384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7566030 7566407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7569668 7569784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7573142 7573195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7576453 7577012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7579755 7580064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7585901 7586069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7615982 7616098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7617113 7617282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7619581 7619590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGCGGAACTATGATTCTGGGCCTCCCCCATCTACTGTCATTAACCAAAATGAAACATTTGCCAACATAA
TTTTTAAACCTACTGTAGTACAACAAGCCAGGATTGCCCAGAATGGAATTTTGGGAGACTTTATCATTAG
ATATGACGTCAATAGAGAACAGAGCATTGGGGACATCCAGGTTCTAAATGGCTATTTTGTGCACTACTTT
GCTCCTAAAGACCTTCCTCCTTTACCCAAGAATGTGGTATTCGTGCTTGACAGCAGTGCTTCTATGGTGG
GAACCAAACTCCGGCAGACCAAGGATGCCCTCTTCACAATTCTCCATGACCTCCGACCCCAGGACCGTTT
CAGTATCATTGGATTTTCCAACCGGATCAAAGTATGGAAGGACCACTTGATATCAGTCACTCCAGACAGC
ATCAGGGATGGGAAAGTGTACATTCACCATATGTCACCCACTGGAGGCACAGACATCAACGGGGCCCTGC
AGAGGGCCATCAGGCTCCTCAACAAGTACGTGGCCCACAGTGGCATTGGAGACCGGAGCGTGTCCCTCAT
CGTCTTCCTGACGGATGGGAAGCCCACGGTCGGGGAGACGCACACCCTCAAGATCCTCAACAACACCCGA
GAGGCCGCCCGAGGCCAAGTCTGCATCTTCACCATTGGCATCGGCAACGACGTGGACTTCAGGCTGCTGG
AGAAACTGTCGCTGGAGAACTGTGGCCTCACACGGCGCGTGCACGAGGAGGAGGACGCAGGCTCGCAGCT
CATCGGGTTCTACGATGAAATCAGGACCCCGCTCCTCTCTGACATCCGCATCGATTATCCCCCCAGCTCA
GTGGTGCAGGCCACCAAGACCCTGTTCCCCAACTACTTCAACGGCTCGGAGATCATCATTGCGGGGAAGC
TGGTGGACAGGAAGCTGGATCACCTGCACGTGGAGGTCACCGCCAGCAACAGTAAGAAATTCATCATCCT
GAAGACAGATGTGCCTGTGCGGCCTCAGAAGGCAGGGAAAGATGTCACAGGAAGCCCCAGGCCTGGAGGC
GATGGAGAGGGGGACACCAACCACATCGAGCGTCTCTGGAGCTACCTCACCACAAAGGAGCTGCTGAGCT
CCTGGCTGCAAAGTGACGATGAACCGGAGAAGGAGCGGCTGCGGCAGCGGGCCCAGGCCCTGGCTGTGAG
CTACCGCTTCCTCACTCCCTTCACCTCCATGAAGCTGAGGGGGCCGGTCCCACGCATGGATGGCCTGGAG
GAGGCCCACGGCATGTCGGCTGCCATGGGACCCGAACCGGTGGTGCAGAGCGTGCGAGGAGCTGGCACGC
AGCCAGGACCTTTGCTCAAGAAGCCATACCAGCCAAGAATTAAAATCTCTAAAACATCAGTGGATGGTGA
TCCCCACTTTGTTGTGGATTTCCCCCTGAGCAGACTCACCGTGTGCTTCAACATTGATGGGCAGCCCGGG
GACATCCTCAGGCTGGTCTCTGATCACAGGGACTCTGGTGTCACAGTGAACGGAGAGTTAATTGGGGCAC
CCGCCCCTCCAAATGGCCACAAGAAACAGCGCACTTACTTGCGCACTATCACCATCCTCATCAACAAGCC
AGAGAGATCTTATCTCGAGATCACACCGAGCAGAGTCATCTTGGATGGTGGGGACAGACTGGTGCTCCCC
TGCAACCAGAGTGTGGTGGTGGGGAGCTGGGGGCTGGAGGTGTCCGTGTCTGCCAACGCCAATGTCACCG
TCACCATCCAGGGCTCCATAGCCTTTGTCATCCTCATCCACCTCTACAAAAAGCCGGCGCCCTTCCAGCG
ACACCACCTGGGTTTCTACATTGCCAACAGCGAGGGCCTTTCCAGCAACTGCCACGGACTGCTGGGTCAG
TTCCTGAATCAGGATGCCAGACTCACAGAAGACCCTGCAGGGCCCAGCCAGAACCTCACTCACCCTCTGC
TCCTTCAGGTGGGAGAGGGGCCTGAGGCCGTCCTAACAGTGAAAGGCCACCAAGTCCCAGTGGTCTGGAA
GCAAAGGAAGATTTACAACGGGGAAGAGCAGATAGACTGCTGGTTTGCCAGGAACAATGCCGCCAAACTG
ATTGACGGGGAGTACAAGGATTACCTGGCATCCCATCCATTTGACACAGGGATGACACTTGGCCGGGGAA
TGTCCAGGGAGCTCTGA

Translation (728 aa):
MRNYDSGPPPSTVINQNETFANIIFKPTVVQQARIAQNGILGDFIIRYDVNREQSIGDIQVLNGYFVHYF
APKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSIIGFSNRIKVWKDHLISVTPDS
IRDGKVYIHHMSPTGGTDINGALQRAIRLLNKYVAHSGIGDRSVSLIVFLTDGKPTVGETHTLKILNNTR
EAARGQVCIFTIGIGNDVDFRLLEKLSLENCGLTRRVHEEEDAGSQLIGFYDEIRTPLLSDIRIDYPPSS
VVQATKTLFPNYFNGSEIIIAGKLVDRKLDHLHVEVTASNSKKFIILKTDVPVRPQKAGKDVTGSPRPGG
DGEGDTNHIERLWSYLTTKELLSSWLQSDDEPEKERLRQRAQALAVSYRFLTPFTSMKLRGPVPRMDGLE
EAHGMSAAMGPEPVVQSVRGAGTQPGPLLKKPYQPRIKISKTSVDGDPHFVVDFPLSRLTVCFNIDGQPG
DILRLVSDHRDSGVTVNGELIGAPAPPNGHKKQRTYLRTITILINKPERSYLEITPSRVILDGGDRLVLP
CNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVILIHLYKKPAPFQRHHLGFYIANSEGLSSNCHGLLGQ
FLNQDARLTEDPAGPSQNLTHPLLLQVGEGPEAVLTVKGHQVPVVWKQRKIYNGEEQIDCWFARNNAAKL
IDGEYKDYLASHPFDTGMTLGRGMSREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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