NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30726.1 Public Homo sapiens 1 SSBP3 24 110 108 CCDS HistoryNCBI Gene:23648Re-query CCDS DB by CCDS ID:30726.1Re-query CCDS DB by GeneID:23648See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30726.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371319.8 ENSP00000360370.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371319.8Link to Ensembl Protein Viewer:ENSP00000360370.3Re-query CCDS DB by Nucleotide ID:ENST00000371319Re-query CCDS DB by Protein ID:ENSP00000360370
Original member Current member NCBI NM_001009955.4 NP_001009955.1 Accepted alive Link to Nucleotide Sequence:NM_001009955.4Link to Protein Sequence:NP_001009955.1Re-query CCDS DB by Nucleotide ID:NM_001009955Re-query CCDS DB by Protein ID:NP_001009955Link to BLAST:NP_001009955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009955.1 361 Q9BWW4-2 361 100% 0 0

Chromosomal Locations for CCDS 30726.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54227131 54227160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54228255 54228356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54228449 54228477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54228748 54228826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54239129 54239199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54240905 54240959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54241474 54241509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54242164 54242212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54243235 54243299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54251616 54251692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54251794 54251860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54257127 54257186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54281438 54281527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54401861 54401945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54404576 54404637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54404858 54404930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54405953 54406008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACG
TCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGA
AAAAAACATCACGTTGGGAGAACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTAC
TGTGCAGCTCCTGAAAGGAGAGACACTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTG
CAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCCCAACGATGGGATGCCGGGAGGCCCCATCCC
GCCAGGTTTCTTTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCCAGGCCCCCGATCAGAATGGGA
AACCAGCCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCCCACACGACAAC
AAGGCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTCC
CGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGCCCCGCCATGCCCGGGATT
AACATGGGCCCGGGAGCTGGCAGACCCTGGCCCAATCCTAACAGTGCTAACTCAATTCCATACTCCTCCT
CATCACCTGGTACCTATGTGGGACCCCCTGGTGGTGGCGGTCCTCCAGGAACACCCATTATGCCCAGTCC
CGCAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCGG
TCCAACTTCCCGATGGGTCCCGGCTCGGACGGTCCGATGGGCGGCATGGGTGGCATGGAGCCACACCACA
TGAATGGATCATTAGGGTCAGGCGACATAGACGGACTTCCAAAAAATTCTCCTAACAACATAAGTGGCAT
TAGCAATCCTCCAGGCACCCCTCGAGATGACGGCGAGCTAGGAGGGAACTTCCTCCACTCCTTTCAGAAC
GACAATTATTCTCCAAGCATGACGATGAGTGTGTGA

Translation (361 aa):
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLY
CAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMG
NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGI
NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR
SNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQN
DNYSPSMTMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH