CCDS Report for Consensus CDS

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Report for CCDS30580.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
30580.1	Public	Homo sapiens	1	CLSTN1	24	110	108

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30580.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000377298.9	ENSP00000366513.4	MANE Select	Accepted	alive
		NCBI	NM_001009566.3	NP_001009566.1	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001009566.1	981	O94985-1	981	100%	0	0

Chromosomal Locations for CCDS 30580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	9730508	9730705
1	9731206	9731390
1	9731761	9731896
1	9733401	9733546
1	9733972	9734142
1	9734948	9735174
1	9735467	9735615
1	9735885	9736042
1	9737498	9737554
1	9741094	9741256
1	9743884	9744005
1	9744395	9744643
1	9749461	9749646
1	9749764	9749913
1	9751473	9751681
1	9755114	9755309
1	9756481	9756510
1	9773272	9773394
1	9823643	9823733

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2946 nt):
ATGCTGCGCCGCCCCGCTCCCGCGCTGGCCCCGGCCGCCCGGCTGCTGCTGGCCGGGCTGCTGTGCGGCG GCGGGGTCTGGGCCGCGCGAGTTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCAC AGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTT GCAGAGAGTTTTGAGGTGACAGTCACCAAAGAAGGTGAGATTTGTGGATTTAAAATTCACGGGCAGAATG TCCCCTTTGATGCAGTGGTAGTGGATAAATCCACTGGTGAGGGAGTCATTCGCTCCAAAGAGAAACTGGA CTGTGAGCTGCAGAAAGACTATTCATTCACCATCCAGGCCTATGATTGTGGGAAGGGACCTGATGGCACC AACGTGAAAAAGTCTCATAAAGCAACTGTTCATATTCAGGTGAACGACGTGAATGAGTACGCGCCCGTGT TCAAGGAGAAGTCCTACAAAGCCACGGTCATCGAGGGGAAGCAGTACGACAGCATTTTGAGGGTGGAGGC CGTGGATGCCGACTGCTCCCCTCAGTTCAGCCAGATTTGCAGCTACGAAATCATCACTCCAGACGTGCCC TTTACTGTTGACAAAGATGGTTATATAAAAAACACAGAGAAATTAAACTACGGGAAAGAACATCAATATA AGCTGACCGTCACTGCCTATGACTGTGGGAAGAAAAGAGCCACAGAAGATGTTTTGGTGAAGATCAGCAT TAAGCCCACCTGCACCCCTGGGTGGCAAGGATGGAACAACAGGATTGAGTATGAGCCGGGCACCGGCGCG TTGGCCGTCTTTCCAAATATCCACCTGGAGACATGTGACGAGCCAGTCGCCTCAGTACAGGCCACAGTGG AGCTAGAAACCAGCCACATAGGGAAAGGCTGCGACCGAGACACCTACTCAGAGAAGTCCCTCCACCGGCT CTGTGGTGCGGCCGCGGGCACTGCCGAGCTGCTGCCATCCCCGAGTGGATCCCTCAACTGGACCATGGGC CTGCCCACCGACAATGGCCACGACAGCGACCAGGTGTTTGAGTTCAACGGCACCCAGGCAGTGAGGATCC CGGATGGCGTCGTGTCGGTCAGCCCCAAAGAGCCGTTCACCATCTCGGTGTGGATGAGACATGGGCCATT CGGCAGGAAGAAGGAGACAATTCTTTGCAGTTCTGATAAAACAGATATGAATCGGCACCACTACTCCCTC TATGTCCACGGGTGCCGGCTGATCTTCCTCTTCCGTCAGGATCCTTCTGAGGAGAAGAAATACAGACCTG CAGAGTTCCACTGGAAGTTGAATCAGGTCTGTGATGAGGAATGGCACCACTACGTCCTCAATGTAGAATT CCCGAGTGTGACTCTCTATGTGGATGGCACGTCCCACGAGCCCTTCTCTGTGACTGAGGATTACCCGCTC CATCCATCCAAGATAGAAACTCAGCTCGTGGTGGGGGCTTGCTGGCAAGAGTTTTCAGGAGTTGAAAATG ACAATGAAACTGAGCCTGTGACTGTGGCCTCTGCAGGTGGCGACCTGCACATGACCCAGTTTTTCCGAGG CAATCTGGCTGGCTTAACTCTCCGTTCCGGGAAACTCGCGGATAAGAAGGTGATCGACTGTCTGTATACC TGCAAGGAGGGGCTGGACCTGCAGGTCCTCGAAGACAGTGGCAGAGGCGTGCAGATCCAAGCACACCCCA GCCAGTTGGTATTGACCTTGGAGGGAGAAGACCTCGGGGAATTGGATAAGGCCATGCAGCACATCTCGTA CCTGAACTCCCGGCAGTTCCCCACGCCCGGAATTCGCAGACTCAAAATCACCAGCACAATCAAGTGTTTT AACGAGGCCACCTGCATTTCGGTCCCCCCGGTAGATGGCTACGTGATGGTTTTACAGCCCGAGGAGCCCA AGATCAGCCTGAGTGGCGTCCACCATTTTGCCCGAGCAGCTTCTGAATTTGAAAGCTCAGAAGGGGTGTT CCTTTTCCCTGAGCTTCGCATCATCAGCACCATCACGAGAGAAGTGGAGCCTGAAGGGGACGGGGCTGAG GACCCCACAGTTCAAGAATCACTGGTGTCCGAGGAGATCGTGCACGACCTGGATACCTGTGAGGTCACGG TGGAGGGAGAGGAGCTGAACCACGAGCAGGAGAGCCTGGAGGTGGACATGGCCCGCCTGCAGCAGAAGGG CATTGAAGTGAGCAGCTCTGAACTGGGCATGACCTTCACAGGCGTGGACACCATGGCCAGCTACGAGGAG GTTTTGCACCTGCTGCGCTATCGGAACTGGCATGCCAGGTCCTTGCTTGACCGGAAGTTTAAGCTCATCT GCTCAGAGCTGAATGGCCGCTACATCAGCAACGAATTTAAGGTGGAGGTGAATGTAATCCACACGGCCAA CCCCATGGAACACGCCAACCACATGGCTGCCCAGCCACAGTTCGTGCACCCGGAACACCGCTCCTTTGTT GACCTGTCAGGCCACAACCTGGCCAACCCCCACCCGTTCGCAGTCGTCCCCAGCACTGCGACAGTTGTGA TCGTGGTGTGCGTCAGCTTCCTGGTGTTCATGATTATCCTGGGGGTATTTCGGATCCGGGCCGCACATCG GCGGACCATGCGGGATCAGGACACCGGGAAGGAGAACGAGATGGACTGGGACGACTCTGCCCTGACCATC ACCGTCAACCCCATGGAGACCTATGAGGACCAGCACAGCAGTGAGGAGGAGGAGGAAGAGGAAGAGGAAG AGGAAAGCGAGGACGGCGAAGAAGAGGATGACATCACCAGCGCCGAGTCGGAGAGCAGCGAGGAGGAGGA GGGGGAGCAGGGCGACCCCCAGAACGCAACCCGGCAGCAGCAGCTGGAGTGGGATGACTCCACCCTCAGC TACTGA
Translation (981 aa):
MLRRPAPALAPAARLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLIALDKDAPLRF AESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGVIRSKEKLDCELQKDYSFTIQAYDCGKGPDGT NVKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKQYDSILRVEAVDADCSPQFSQICSYEIITPDVP FTVDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKRATEDVLVKISIKPTCTPGWQGWNNRIEYEPGTGA LAVFPNIHLETCDEPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSGSLNWTMG LPTDNGHDSDQVFEFNGTQAVRIPDGVVSVSPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSL YVHGCRLIFLFRQDPSEEKKYRPAEFHWKLNQVCDEEWHHYVLNVEFPSVTLYVDGTSHEPFSVTEDYPL HPSKIETQLVVGACWQEFSGVENDNETEPVTVASAGGDLHMTQFFRGNLAGLTLRSGKLADKKVIDCLYT CKEGLDLQVLEDSGRGVQIQAHPSQLVLTLEGEDLGELDKAMQHISYLNSRQFPTPGIRRLKITSTIKCF NEATCISVPPVDGYVMVLQPEEPKISLSGVHHFARAASEFESSEGVFLFPELRIISTITREVEPEGDGAE DPTVQESLVSEEIVHDLDTCEVTVEGEELNHEQESLEVDMARLQQKGIEVSSSELGMTFTGVDTMASYEE VLHLLRYRNWHARSLLDRKFKLICSELNGRYISNEFKVEVNVIHTANPMEHANHMAAQPQFVHPEHRSFV DLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHRRTMRDQDTGKENEMDWDDSALTI TVNPMETYEDQHSSEEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDSTLS Y

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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