NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2792.1 Public Homo sapiens 3 C3orf62 24 110 108 CCDS HistoryNCBI Gene:375341Re-query CCDS DB by CCDS ID:2792.1Re-query CCDS DB by GeneID:375341See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343010.8 ENSP00000341139.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343010.8Link to Ensembl Protein Viewer:ENSP00000341139.3Re-query CCDS DB by Nucleotide ID:ENST00000343010Re-query CCDS DB by Protein ID:ENSP00000341139
Original member Current member NCBI NM_198562.3 NP_940964.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198562.3Link to Protein Sequence:NP_940964.1Re-query CCDS DB by Nucleotide ID:NM_198562Re-query CCDS DB by Protein ID:NP_940964Link to BLAST:NP_940964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940964.1 267 Q6ZUJ4 267 100% 0 0

Chromosomal Locations for CCDS 2792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49271180 49271445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49274049 49274140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49276427 49276872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGCATTACATAAAGACATGGTCGCTTTTAGGAGAAATGTCTGAAAAACTAAGAAGATGCAGAAAGGAAC
TGACTGCAGCCATTGACCGGGCCTTTGAAGGAGTTAGTTATTCCCAGGAGTGCACAGGCCAGCAGAGGCT
GGAACTGAGCGCCGCGCCGCTCTCCTTCTCGCTGCCCGTGCACAGGCTCCTCTGCAGAAGACATCCTCTG
GCAGCCTGCTCTTCTGCTGCTCCTTTTGCTGCTGTCCCATGTGCTCCTGAGAATGAGAACCCTGCCTTTG
CAACAAACCATGCCCCGGTAAATGCAAAACCACATGCTCTGTGCCCCGAGAGAAAACCTCTAACCAGCAA
GGAAAATGTATTGATGCATTCCTCCATTTTGGCACCTGAAAGAGAGTCTTGGAGAACTGCAGGAGAGGGG
GAAAACTGGAGAAAAGAAAATTTAAGGAAAGATATGGAGAGAGATTTGAAGGCTGACTCAAACATGCCAC
TCAACAATTCTAGCCAAGAGGTCACAAAGGATCTGCTTGATATGATTGACCATACAAGCATCCGAACTAT
TGAAGAATTGGCTGGAAAAATAGAATTTGAAAACGAATTGAACCACATGTGTGGTCATTGCCAAGATTCA
CCCTTCAAAGAGGAAGCCTGGGCCCTGCTCATGGACAAGAGCCCTCAGAAGGCCACAGATGCTGACCCTG
GCAGCCTCAAACAGGCTTTTGATGATCATAATATTGTTGAGACTGTTCTGGACTTGGAAGAGGACTACAA
TGTGATGACGTCTTTTAAATACCAAATTGAGTAA

Translation (267 aa):
MHYIKTWSLLGEMSEKLRRCRKELTAAIDRAFEGVSYSQECTGQQRLELSAAPLSFSLPVHRLLCRRHPL
AACSSAAPFAAVPCAPENENPAFATNHAPVNAKPHALCPERKPLTSKENVLMHSSILAPERESWRTAGEG
ENWRKENLRKDMERDLKADSNMPLNNSSQEVTKDLLDMIDHTSIRTIEELAGKIEFENELNHMCGHCQDS
PFKEEAWALLMDKSPQKATDADPGSLKQAFDDHNIVETVLDLEEDYNVMTSFKYQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH