NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1628.1 Public Homo sapiens 1 CNST 24 110 108 CCDS HistoryNCBI Gene:163882Re-query CCDS DB by CCDS ID:1628.1Re-query CCDS DB by GeneID:163882See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1628.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366513.9 ENSP00000355470.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366513.9Link to Ensembl Protein Viewer:ENSP00000355470.4Re-query CCDS DB by Nucleotide ID:ENST00000366513Re-query CCDS DB by Protein ID:ENSP00000355470
Original member Current member NCBI NM_152609.3 NP_689822.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152609.3Link to Protein Sequence:NP_689822.2Re-query CCDS DB by Nucleotide ID:NM_152609Re-query CCDS DB by Protein ID:NP_689822Link to BLAST:NP_689822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689822.2 725 Q6PJW8-1 725 100% 0 0

Chromosomal Locations for CCDS 1628.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 246591563 246591941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246621429 246621634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246631894 246631924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246633924 246634010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246634473 246634587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246641749 246641770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246641941 246642037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246647139 246648037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246660199 246660334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 246665700 246665905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGATGACAGCGATACTCCTACATATTATCTGCAAATAGAACCACAAGATGGATGTCATCCTGGTGACA
GCGTGGAAAGGAGTGTGACCTGTCTGCCTTCTGCATCAGATGAAAATGAAAATCAGCTTGACGGGGACGG
GCATGAGCATCTGACCAGCAGTGACAGTGCGATGGGAAAGCCCCAAGTGTCTGAGCAGGACAGTCTCAAT
AATAATGAAAGCTGCACATTGAGCTGCGAGGTGGCTGCAGGTGAGAACTTGCAAAACACCCTTTGTGAAG
CCTCCAGAGATGAACAGGCCTTCTTGGGAAAGGACAAAAAAATTCCTGGAAAAAGAAGTCCAAGAAGCAA
AAAAGGGACTGCTAAGAAGATACCACCAGGACTTTTTTCAGGAGATATTGCACCTTTAATGCAAGAAAAA
GTACTAAGCGCAGTCACATATGCTGTTGATGATGAAGAAGCTGCTGAAGTAAATGCTAATGAGCAGCCAG
AGGCGCCAAAGCTTGTTCTGCAGTCTCTGTTTTCACTTATACGAGGTGAAGTTGAGCAGTTGGATTCAAG
AGCACTTCCCCTTTGCCTTCATCAGATAGCAGAATCCTATTTCCAGGAGGAGGACTATGAGAAAGCAATG
AAATTCATTCAGCTAGAACGATTGTATCATGAGCAATTGCTCGCAAATCTTTCTGCCATTCAAGAACAGT
GGGAAACAAAATGGAAAACTGTGCAACCACATACAGTTACGGCTCTAAGGAATTCAGAAAAGGGATTTAA
TGGTGAAGATTTTGAACGGCTTACGAAAATTTGTGCAACACATCAAGATCCTCTTTTATCCAAACATAAG
ATAGCAGCTGTGGAGAAGTCCCAGGAAAGGAAATGCTCCACGCAGTTACTAGTGTCTGAAGATCCAAAGG
AAGGAGGAGCTACCACCAAAGAGTCAGAGAGTAAAACTTGTCTCGGCACAGAGTCAAGTAAAGAAAGCCA
ACATACAGTGGAGCCCCTGGGGAGCAGTCCCTGCTGTCATCAGATGGACGTGCAAACAGATTCCCCAAGC
CTTTCGGTAACTGCAGGAAAGGACCACATGGAGGAGCTGCTCTGCAGCGCTGAAGCCACGTTAGCGCTCC
ACACCCAGTCCTCCGAGACAGCAGGGAGCCCGTCTGGGCCAGACTCTTCTGAGGATGCTTGTGAGGATGA
CAGTCGCTTGCAGCTGGCTCAAACAGAGGCCTGCCAGGATGTGGCCAGAATAGAGGGCATTGCTGAAGAC
CCTAAGGTGTTTCTTTCCAGCAAGTCAAAGACAGAGCCGTTGATTTCACCAGGCTGTGACCGTATACCTC
CTGCATTGATTTCTGAGGGTAAATATTCACAGGCTCAGAGGAAAGAACTCCGTTTGCCACTTCGGGATGC
TTCTGAGGCGTTGCCCACAGACCAACTTGAGAACAATGAATTAAATGAGCTGCAGCAGCCTGATCTTACA
GACAGTGATGGAAAATCACCACAGGCGCAGGCTGACTCAGACGGTTCTGAGAATGTGCTCTGTGGAAATA
ATCAAATATCTGACTTAGGCATACTGCTTCCAGAGGTGTGTATGGCCCCAGAGGAAAAGGGAGATAAAGA
CGACCAACTCAACAAAGAAACAGAAGACTATTTGAACAGCCTTTTAGAAGGATGTTTAAAAGATACTGAA
GATTCCCTTTCCTATGAAGATAACCAAGACGACGACTCCGATCTCCTTCAAGATCTCTCTCCTGAAGAAG
CATCCTATAGTCTCCAGGAGAATCTGCCTTCTGATGAGAGCTGTCTTTCTCTTGATGATCTTGCCAAAAG
GATAGAGATTGCAGAGGTTGTTCCTACTGAAGGATTGGTCTCCATATTAAAGAAGAGGAATGATACTGTA
GGAGATCATCCTGCCCAAATGCAACACAAACCATCTAAGCGAAGAGTGAGATTCCAAGAAATAGACGATA
GCTTGGATCAAGATGAAGTTGGAGGTGGCTCCTGTATTTTGCTGGTCTTGCTGTGCATAGCAACGGTTTT
CCTCAGTGTTGGAGGAACTGCATTATACTGCACTTTCGGTGACATGGAGTCACCTGTTTGTACTGACTTT
GCAGACAACATGGACTTCTATTACACTAAGTTACTTCAGGGAGTGGCAGAACTGAAGCACTGGATCTACC
TCTCCTAG

Translation (725 aa):
MDDSDTPTYYLQIEPQDGCHPGDSVERSVTCLPSASDENENQLDGDGHEHLTSSDSAMGKPQVSEQDSLN
NNESCTLSCEVAAGENLQNTLCEASRDEQAFLGKDKKIPGKRSPRSKKGTAKKIPPGLFSGDIAPLMQEK
VLSAVTYAVDDEEAAEVNANEQPEAPKLVLQSLFSLIRGEVEQLDSRALPLCLHQIAESYFQEEDYEKAM
KFIQLERLYHEQLLANLSAIQEQWETKWKTVQPHTVTALRNSEKGFNGEDFERLTKICATHQDPLLSKHK
IAAVEKSQERKCSTQLLVSEDPKEGGATTKESESKTCLGTESSKESQHTVEPLGSSPCCHQMDVQTDSPS
LSVTAGKDHMEELLCSAEATLALHTQSSETAGSPSGPDSSEDACEDDSRLQLAQTEACQDVARIEGIAED
PKVFLSSKSKTEPLISPGCDRIPPALISEGKYSQAQRKELRLPLRDASEALPTDQLENNELNELQQPDLT
DSDGKSPQAQADSDGSENVLCGNNQISDLGILLPEVCMAPEEKGDKDDQLNKETEDYLNSLLEGCLKDTE
DSLSYEDNQDDDSDLLQDLSPEEASYSLQENLPSDESCLSLDDLAKRIEIAEVVPTEGLVSILKKRNDTV
GDHPAQMQHKPSKRRVRFQEIDDSLDQDEVGGGSCILLVLLCIATVFLSVGGTALYCTFGDMESPVCTDF
ADNMDFYYTKLLQGVAELKHWIYLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH