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Report for CCDS1553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1553.1 Public Homo sapiens 1 LIN9 24 110 108 CCDS HistoryNCBI Gene:286826Re-query CCDS DB by CCDS ID:1553.1Re-query CCDS DB by GeneID:286826See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328205.9 ENSP00000329102.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328205.9Link to Ensembl Protein Viewer:ENSP00000329102.5Re-query CCDS DB by Nucleotide ID:ENST00000328205Re-query CCDS DB by Protein ID:ENSP00000329102
Original member Current member NCBI NM_173083.3 NP_775106.2 Accepted alive Link to Nucleotide Sequence:NM_173083.3Link to Protein Sequence:NP_775106.2Re-query CCDS DB by Nucleotide ID:NM_173083Re-query CCDS DB by Protein ID:NP_775106Link to BLAST:NP_775106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775106.2 558 Q5TKA1-2 558 100% 0 0

Chromosomal Locations for CCDS 1553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226232501 226232606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226233096 226233193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226233344 226233523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226238971 226239096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226250839 226250919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226265533 226265634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226266213 226266332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226267957 226268090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226277775 226277932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226286333 226286458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226287664 226287797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226295842 226295946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226297719 226297813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226301173 226301205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226309109 226309187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGCACCGCGGCGGGCAGCCTTTGAAAAAGCGGCGCGGCTCGTTCAAGATGGCGGAGCTCGACCAGTTGC
CTGACGAGAGCTCTTCAGCAAAAGCCCTTGTCAGTTTAAAAGAAGGAAGCTTATCTAACACGTGGAATGA
AAAGTACAGTTCTTTACAGAAAACACCTGTTTGGAAAGGCAGGAATACAAGCTCTGCTGTGGAAATGCCT
TTCAGAAATTCAAAACGAAGTCGACTTTTTTCTGATGAAGATGATAGGCAAATAAATACAAGGTCACCTA
AAAGAAACCAGAGGGTTGCAATGGTTCCACAGAAATTTACAGCAACAATGTCAACACCAGATAAGAAAGC
TTCACAGAAGATTGGTTTTCGATTACGTAATCTGCTCAAGCTTCCTAAAGCACATAAATGGTGTATATAC
GAGTGGTTCTATTCAAATATAGATAAACCACTTTTTGAAGGTGATAATGACTTCTGTGTATGTCTAAAGG
AATCTTTTCCTAATTTGAAAACAAGAAAGTTAACAAGAGTAGAATGGGGAAAAATTCGGCGGCTTATGGG
AAAACCACGGAGATGTTCTTCTGCATTTTTTGAGGAAGAGAGATCAGCATTAAAACAGAAACGGCAGAAA
ATAAGGCTCTTACAACAAAGGAAAGTTGCAGATGTTTCACAATTCAAAGATCTCCCAGATGAAATTCCTT
TGCCTCTGGTTATTGGAACGAAAGTTACAGCACGATTACGTGGTGTTCATGATGGTTTGTTCACTGGACA
AATAGATGCTGTGGATACTCTTAATGCTACTTATAGAGTAACTTTTGATAGGACAGGGCTTGGAACCCAT
ACCATCCCTGACTATGAAGTTCTCAGTAATGAACCTCATGAGACAATGCCAATTGCTGCCTTTGGACAAA
AACAGCGGCCTTCTCGATTTTTTATGACCCCACCACGGTTACATTATACTCCTCCTCTCCAGTCACCAAT
TATAGATAATGATCCTTTATTAGGACAGTCGCCGTGGAGAAGTAAAATTTCTGGCTCTGACACTGAAACA
TTAGGTGGTTTTCCAGTAGAATTTCTTATCCAAGTGACCAGATTATCAAAAATTCTCATGATTAAAAAGG
AACATATCAAGAAATTAAGGGAAATGAACACAGAAGCAGAAAAATTGAAATCATATTCCATGCCCATCAG
CATTGAATTTCAGCGGAGATATGCAACAATTGTTCTGGAGCTTGAACAGCTGAACAAGGACCTAAACAAA
GTTTTGCATAAAGTTCAACAGTATTGCTATGAGCTTGCTCCAGACCAGGGGCTCCAGCCTGCAGATCAGC
CAACAGATATGAGACGCAGGTGTGAGGAAGAAGCACAGGAAATTGTTCGGCATGCAAATTCCTCAACAGG
ACAGCCCTGCGTTGAAAATGAAAATCTGACAGACTTAATTTCCAGGCTTACAGCTATTTTGTTACAAATT
AAGTGTCTAGCAGAAGGAGGAGACCTGAATTCCTTTGAATTCAAATCACTTACAGACTCATTAAATGATA
TCAAGAGTACAATAGACGCTTCTAATATCAGTTGCTTTCAGAATAATGTAGAAATCCATGTTGCACATAT
TCAGAGTGGCCTGAGCCAGATGGGAAACTTACATGCCTTTGCAGCAAATAACACCAACAGAGACTGA

Translation (558 aa):
MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKGRNTSSAVEMP
FRNSKRSRLFSDEDDRQINTRSPKRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIY
EWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQK
IRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTH
TIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTET
LGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNK
VLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQI
KCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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